BEYOND BIOLOGY:

Contents:

Shelly and Weinberg quote

Major Arguments

Species Radiation

Anthropic Principle

Carbon and Silicon

Computer Thought

Design and Serendipity

Genetic Knowledge

Human Condition

Eternal Mind

 

Prometheus Unbound

 

And he tamed fire which, like some beast of prey,

Most terrible, but lovely, played beneath

The frown of man; and tortured to his will

Iron and gold, the slaves and signs of power,

And gems and poisons, and all subtlest forms

Hidden beneath the mountains and the waves,

He gave man speech, and speech created thought,

Which is the measure of the universe;

And Science struck the thrones of earth and heaven,

Which shook, but fell not; and the harmonious mind

Poured itself forth in all-prophetic song;

and music lifted up the listening spirit

Until it walked, exempt from mortal care,

Godlike, o'er the clear billows of sweet sound;

And human hands first mimicked and then mocked,

With moulded limbs more lovely than its own,

The human form, till marble grew divine;

And mothers, gazing, drank the love men see

Reflected in their race, behold, and perish.

He told the bidden power of herbs and springs,

And Disease drank and slept, Death grew like sleep.

He taught the implicated orbits woven

Of the wide-wandering stars; and how the sun

Changes his lair, and by what secret spell

The pale moon is transformed, when her broad eye

Gazes not on the interlunar sea:

He taught to rule, as life directs the limbs,

The tempest-winged chariots of the Ocean,

And the Celt knew the Indian, Cities then

Were built, and through their snow-like columns flowed

The warm winds, and the azure aether shone,

And the blue sea and shadowy hills were seen.

Such the alleviations of his state,

Prometheus gave to man, for which he hangs

Withering, in destined pain: but who rains down

Evil, the immedicable plague, which, while

Man looks on his creation like a God

And sees that it is glorious, drives him on,

The wreck of his own will, the scorn of earth, The outcast, the abandoned, the alone?

Not Jove: while yet his frown shook Heaven, ay, when

His adversary from adamantine chains

Cursed him, he trembled like a slave…

Who is his master? Is he too a slave?

 

From Prometheus Unbound by Percy B. Shelley

 

 

 

“The experience of the last 150 years has shown us that life is subject to the same laws of nature as inanimate matter.  Nor is there any evidence in a grand design in the origin or the evolution of life.  There are well-known problems in the description of consciousness in terms of the working of the brain.  They arise because we each have special knowledge of our own consciousness that does not come to us from the senses.  In principle, no obstacle stands in the way of explaining the behavior of other people  in terms of neurology and physiology and, ultimately, in terms of physics and history.  When we have succeeded in this endeavor, we should find that part of the explanation is a program of neural activity that we will recognize as corresponding to our own consciousness.

But as much as we would like to take a unified view of nature , we keep encountering a stubborn duality in the role of intelligent life in the universe, as both subject and student.   We see this even in the deepest level of quantum physics, “[1]

 

 

The Titan Prometheus ("forethought") fashioned man and brought fire from Mount Olympus. His brother Epimetheus  profligately gifted all the other animals, fleet legs for running,  flight for birds and so on, but ran out of attributes by the time he got to man.  Prometheus made man upright so he could occasionally look upward at the stars, and taught man technology, astronomy the arts and language to separate men from the animals.  Man was thus made, by virtue of his know-how, in the image of the gods.  Prometheus had done his work so well that mankind threatened the gods. Zeus had Prometheus chained to a rock in the Caucasus.   By day a vulture would tear at his liver that regrew at night, ensuring endless torment.  Zeus would have freed Prometheus.  But Prometheus was a rebel who refused to give up information which Zeus craved.  Hercules heroically set Prometheus free. Romantic poets like Shelley and Byron were  inspired by the Titans, and Prometheus in particular, as figures who resolutely stood up to the imperial powers of conventional gods as led by Zeus.

In Genesis, Adam and Eve are created in a pristine blissful ignorance, all needs, eternal life provided for in the womb-like Garden of Eden. Eve takes knowledge for herself, encouraged by the evil rebel  Satan.  In fact  God created a world, beings and circumstances that made these events inevitable, and therefore in His own omniscience, He certainly planned to make things  go just  this way.  Man, even in Genesis, was intended to have knowledge and all its consequences. If  in biblical tradition knowledge is Satanic in Greek lore, it is Promethian, heroic. Both agree that man, in acquiring knowledge and thought becomes  god-like.  Surely experience teaches us that knowledge has good and evil consequences.

In former generations man's level of expertise grew almost linearly. There were distinct limits in our ability to know. Men in other times were bound to the earth.  They knew nothing of what they saw as they stared into the sky, the true extent of the cosmos, of other galaxies just our own Milky Way, that contain hundreds of billions of stars.  Earth's gravity limited them too.  Only recently have men been able to fly and even to occasionally escape earth's gravitational field. And knowledge was very limited in other ways, about our own makeup, and how it might be changed, about the basics of biology and the biochemistry of genes and how genes can be altered.  Also knowledge was once province of the relatively privileged few, while today it is democratized.  Everyone with a computer and this will be just about everyone, will feed at the trough of knowledge as libraries as we know them, become a thing of the past.  The quantity of knowledge more than ever, is growing exponentially, explosively.  And so mankind is escaping all limits all bounds, as in the past, but the likes of which, quantitatively we have never witnessed before.  On the brink of the twenty-first century we have, ladies and gentlemen, Prometheus Unbound, not freedom only, that would be relatively trivial, but knowledge and possibilities beyond bound.

What will happen when we truly are aware that we've escaped finally the limits and gravity of the earth, that we gaze upon the true magnificence of the cosmos, that once and for all we've thrown off the fetters of our own biological limitations?  No one knows, nor can predict.

In previous chapters I explored biological and neurological mechanisms that lay the foundation for our humanness.  As useful as these mechanisms are, we have found them wanting.  Section one dealt with various states of consciousness, unconscious and altered states of awareness. Consciousness is a composite function involving various specialized modules tied together by an executive. The anatomical location of this kernel-integrating unit is unknown at present and the executive function cannot be described given our current level of knowledge. A complete accounting of the miracle of consciousness will require a basic revolution in our mode of thinking. In section two we looked at vision as a model for  sensory  perception.  Again we had the advantage that more is known about the physiology of vision than any other sense.   In Section three I explored memory, as the simplest mental faculty, would be more difficult to describe, given our current state of knowledge. Memory is far more complex than one would imagine, as it is linked with other cognitive abilities. Finally the fourth section dealt with executive function as an extension of motor or efferent function.  In all cases there was a lot of very useful knowledge, yet there was the sense that mechanistic explanations were far from adequate.  The deeper we got into physical explanations for neural function, the more we had to learn.  Any scientist would acknowledge that they can't explain a lot of phenomena, but most would maintain that this is only due to the deplorable state of our current knowledge, that given time and enough hard work, "brute force" utilizing the scientific method, scientists will slowly tease out the answers to all of our deepest mysteries. Science is a temptress at once beguiling us as layers of knowledge are peeled away, but when it comes to understanding of ourselves our fondest wish may never be fulfilled or at least our deepest questions will not be solved solely by the scientific method.  As far as humans are concerned there is more than meets the material eye.

Scientists are in the best position to appreciate the limitations of science. Layman or non-scientists see science from afar. Wowed by practical technological advancements and having limited understanding of scientific techniques and methods, they tend to view science as an all powerful extraordinary undertaking.  Scientists on the other hand, aren't anxious to give up their admiration even majesty and mystique.   With the deepest respect for the scientific method,  I have come to the conclusion that there is far more to human potential than will ever be revealed by science. 

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In this chapter we will make a more advanced argument.  Here we will ignore the fact that scientific explanations are necessarily incomplete. We will begin to observe that humankind has already ventured past biological bounds. Previous chapters have scanned abilities and connected them with neurological and physical principles.  Mental capacities are deeply embedded or immanent in biology.   But biology does not explain all. Some capacities transcend biological mechanisms, typically the works of modern man in recent centuries and especially of recent years. This may be the very reason that these capacities have yet to be appreciated for what they are, beyond or transcending biology.  One of the pivotal concepts of theology is an immanent and transcendent God by which is meant that the spirit of God is at the same time deeply situated in the world and hovering above it. Leaving theology aside here, I borrow this useful concept for the idea of humankind, embedded in (immanent) and at the same time, transcendent upon biology, science, matter, mechanics.

A reasonable question is what drives a species to explore new territory. Answering this question gives us a better handle on human exploration, the desire to explore possibilities outside of the current range.  Is exploration of surroundings beyond our own a purely  biological imperative which we fulfill so eminently merely because of the size of our brain and use of superior mental tools also provided by biology, or is there something more to it, a striving that is outside over and above what is provided by biology?

To answer this we need to examine what keeps an organism in a particular habitat and what are the forces that drive it to explore other environments, from whence comes wanderlust?  A given species of plant will survive and compete best at a particular altitude within the dense lush growth of a rain forest. It is well adapted there. Where there is abundant speciation, this range of habitat can be extremely narrow.  On the other hand when competition is limited the range can be quite large.   Pines and maples compete successfully within a certain latitude describing a particular temperature and humidity ranges or alternately within a given range of elevation above sea level.  It is not as if maple trees have not dropped seeds above or below this level, only that other species compete more successfully because of more or less cold or heat or water adaptation or due to different relationships with animal fauna.

Hominid forebears of humans adapted away from apelike ancestors fit for life in trees.  Hominids favored the savanna and later the desert as bipeds. Pelves became shorter and wider, the lumbar or lower spine longer, the arms shorter all in preparation for a bipedal existence rather than a knuckle walking.  According to new evidence, it was not a new hominid line that separated from the rest of the apes, chimps, gorillas and orangs between five and seven millions of years ago. Rather, chimp and human lines formed their own branch for a time separating from other apes.  It is said humans share 98 percent of  genes with the chimpanzee,  our closest living relative, but this depends on the method of reckoning for what constitutes an identical gene. There are striking similarities and differences between the two species not to mention the most obvious, that our brain is about 1350 cc. Compared to the chimp's 400. A bigger brain of course comes into the world through its mother's pelvis.  She needs to be able to walk as well as to give birth. Eve's curse for eating of the tree of knowledge of good and evil "I will greatly multiply thy pain and thy travail; in pain shalt thou bring forth children" is literally due to bringing forth children with large enough brains apprehend this knowledge. Our offspring matriculate in the real world.  Since a pelvis capable of a reasonable ambulation can give  birth to a neonatal head with a brain of not more than about 350 cc. and the adult brain of 1350 cc is some four times this size, the other necessary accommodation  to the excessive size of the adult human brain is a prolonged dependent childhood, fostering the brain's physical as well as mental development[2].

Men, apes and indeed all species fill their own ecological niche.  Time saw a progression of proto-human forms such as the Australopithecines, still later Homo habilis, Homo erectus and finally Neanderthals and  modern man, Homo sapiens sapiens. After Australopithicus, the genus Homo separated on its own evolutionary branch from other apes. The first upright hominids were more adapted to life on a sparsely treed grass plain with their upright posture and built better for running distances than brachiating through trees.  Erectus' brain size was in the range of about 900-1100 cc. Their tool technology named for specific sites of discovery as 'Oldowan' for the Olduvai Gorge or the only slightly more advanced 'Acheulian' for St. Acheul finds in France. A major difference in these is the size of sharp stone tools, larger axes in the latter replacing simple choppers. A debating point is whether it was merely tool-making technology, essentially static and producing few, perhaps 10 of so variants over a period of perhaps 1.2 million years, that co-evolved with increasing brain size or if it was something else, the change from foods made of primarily vegetable matter to a more catholic or varied taste for meats and a resulting more complex savage but at the same time cooperative society of specialists necessitated by a hunter gatherer existence, or even the development of some spoken language even which necessitated brain growth and hence made a more plastic and response to environmental stresses possible.  One can legitimately ask, from whence derives the first furtive rangings into the growth of the intellect.  From earlier chapters we know the brain as an organ of afferent, associative and efferent (e.g. tool-making) function, so it is easy to see that tool making or efferent function can only be part of the story behind increasing brain size and complexity.  Intellect is a composite function of brain modules.  It was not, as some theorists suggest, merely the freeing of human hands, by the upright stance of men, though that is related to the growth of the motor and sensory convexities of the brain which deal specifically with the hands. (Recall the hands on the homunculus of the brain are represented by the cerebral convexities and not in the midline which represents the feet.) we aren't the only organisms by far to stand on two feet and have free hands.  Dinosaurs and ostriches have free upper extremities as well but very small brains.

Somewhere along the course of human evolution, the familiar menstrual cycle replaced the standard ape estrus cycle.  This meant women were sexually receptive most of the time rather than only about twice a year during a brief period of fertility. And the enlargement of the male penis and testicles, adapted for increasingly frequent copulations. Sex was a bigger deal.  These changes sponsored far more enduring cultural ties, perhaps long-term commitments, and stable family relations (either monogamous or polygynous). The growth of cultural relations in general was probably the most potent stimulant for brain growth.  The development of culture implies a meaningful tradition is passed down and is in a communal repository to be built upon and improved. Homo Erectus dating from as long ago as 1.8 million years ago has been found as far afield as Java Indonesia.  How did these proto-humans travel over water except via some floating craft that were used as tools for exploration and adventure? And how would it be possible for one proto-human to produce such crafts except by building on the experience of previous intrepid explorers?

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Current evidence is that at least the later forms particularly the Neanderthals, successfully radiated all over the map, through the Levant to Europe and Asia out of Africa..  Parts of Neanderthal skeletons are found throughout the Near East, Europe and Asia though the lion's share of Neanderthal sights are in Germany where they were first discovered,  France, and throughout Europe. It now appears Neanderthal with his thicker build, constituted a variant of the human form built for colder weather.  There is a great debate as to whether thick boned Neanderthals are our direct ancestors or whether if Neanderthals existed today, some of us  might even be inclined to breed with them as fellow humans, if they might be considered so closely related as to be of the species Homo sapiens, in other words.  Neanderthals were thick-boned humans, with enlarged muscle insertions obvious on their bones,  fostering the stereotype of large muscled cave dwelling brutes with thick widened brows.

But they were human in a lot of respects. Neanderthals were extant from about 200,000 to 35,000 years ago. Their brains were slightly larger than ours up to the 1500cc range, though we have no knowledge of their brain's microscopical anatomy or synaptic relations between cells and we can only conjecture even about the size of individual lobes, Broca's and Wernicke's areas involved in language and therefore social function .  They were tool makers more advanced than H. erectus,  founders of the Mousterian (for Le Moustier on the Dordogne) tool-making culture of 60 or so different tools, an exponential increase in tool making variation over their Homo erectus predecessors.  There is reasonable evidence that they buried their dead in special ceremonies, pollen remains of flowers and animals to provide food for the deceased have been found with Neanderthal remains indicating some adornment of a ritually buried person, so Neanderthals would certainly have wondered,  as we do,  about the meaning of life as they looked up at the stars and conjectured about an afterlife and were aware of the limitations of time. I'd venture to say that few, if any, animal dwells upon its own death, as Neanderthals most probably did. No one knows whether Neanderthals, classic "cave men" spoke or not or how advanced were Neanderthal societies.  We suspect that their wonder was in fact expressed through some primitive language, though there is some tentative evidence based on the shape of the base of Neanderthal skulls that they could not have generated as many phonemes as modern men are capable of. Their rites and dances, teachings about the hunt, human relationships, marriage and the family do not survive with their bones. 

As much as Neanderthals were thick boned and thick muscled with big brows,  modern humans are thin boned or gracile.  Our skeleton and body are much lighter; there is more marrow, cancellous or latticed bone and less heavy calcium with smaller muscles.  The earliest modern humans, are recognized by their gracile, thin-boned less brutish skeletons, especially a thinner brow ridge, due to the fact that the skeleton is what is left of them. Well before the invention of writing, some form of culture probably spread out of Africa within the last 200 thousand years along with a more human biological form. The vocal cords were now lower, the larynx longer, making more advanced phonation possible but at the expense of more difficult deglutition. The time frame for the emergence of modern sapiens is a very tentative estimate based partly on the rate of gene mutations mostly of mitochondrial DNA.  Techniques for comparing DNA have been with us only over the couple of decades.  Mitochondria, the only organelles with their own DNA outside the nucleus, are part of the protoplasm of the cell, hence the ovum, passed down to all of us only through our mother, maker of the egg cell.  When an ovum is fertilized, the successful sperm deposits merely the nuclear genetic material, the rest of the stuff in the zygote's cytoplasm comes from mom. If you are to trace changes in DNA genetic material it is much easier to keep track if you know for a fact it comes from one lineage, namely only through one's mother and that through her mother.

On the basis of expectations of only a finite number of mutations in a small circle of 37 genes that is part of mitochondrial DNA over tens of thousands of years of human generations you have an internal clock in a sense which ticks in divisions of time, so many mutations per 10 thousands of years. Observing DNA taken from current humans all over the world, one can compare the variation in DNA which could only have accumulated through mutation, and draw important conclusions, about the age of last radiation of humans from their starting point wherever that might be to all other habitats.  The two important facts are that the amount of variation between mitochondrial DNA between modern humans would seem to place the date of modern human worldwide migration fairly recent within the last 200,000 years.  Another very surprising fact is that the mitochondrial DNA of indigenous Africans varies much more than the racially diverse DNA of all other locations -there is more variability in Africa itself than at all other locales around the world which would seem to imply that the races are much more related to each other than indigenous Africans. The divergence that are obvious to us and define the differences in humanity all over the globe amount to much ado about nothing from a biological perspective. Intra-racial is greater than inter-racial genetic variation.  This further implies that modern humankind radiated out of Africa then spread all over the globe. Perhaps we had a common female ancestor whom we can conveniently call Eve, mother of us all, in geologically speaking, the not too distant past.

Most probably there were multiple separate radiations of proto-humans over the Old World, showing again that successful animals tend to radiate geographically, to increase their habitat.  Homo erectus, Neanderthals and modern gracile humans radiated out of their original habitats separately.  There is some debate as to whether we are descended from Neanderthals who lived over a wide range of the old world but we now know that the age of Neanderthals and modern humans overlapped by at least a few thousand years. Neanderthals and modern humans lived side by side. The thinner boned less robust more modern humans very probably out-competed the larger brutes.  Modern humans may well have been far more fierce and competitive and killed the Neanderthals off.  Why were moderns more successful?  The best theory is a combination of smarts and more advanced social structures.  More to pass down. Intellect beats brutishness. But let us not take this too far. It couldn't have been the meek inheriting the earth.  We know from recorded history about ruthlessness and cruelty in our own species. Cro magnon may have eaten Neanderthal for lunch.

Enter gracile man, maker of bone tools of many varieties, bead and stone necklaces, Lascaux cave,  user of wood and of fire, cave dweller and human art only some of which done for a practical end. Modern man radiated throughout the known world. 40,000 years ago they went as far as Australia. 15,000 years ago forebears of Amerindians crossed the Bering Strait into Alaska. Perhaps they walked over an icy bridge.  What made them move at times from relative comfort out into the cold uninhabited wilderness, making the transition from what is the same to the different. What makes humans and other animals go where no one has gone before?

There are competing forces at work. Firstly there is crowding and competition. We may reproduce until there is no more carrying capacity in the environment. This holds for inefficient hunter-gatherers in particular. A given habitat is capable of supporting only a small number of persons occupying the pinnacle of the food chain. Ineffective hunting methods with limited implements may allow capture of only the most vulnerable prey, the slow the sick and the old of animal species that are themselves overpopulating their habitat. Competition for food and mates may drive away members of the community who will be forced to make their way in a remote location. The bulk of adult males may wish to strike out on their own, forming an new family unit, founding a new people because of, or in spite of,  the competition.  The great bulk of geographic radiation results from the experiment that each individual of a species ultimately is.  Each person is like an individual seed that falls from a tree.  He will land on a habitat and either survive or not survive, bear fruit or wither, much as does the seed of a tree (perhaps with a higher probability of survival than a plant seed).

 

Animal or plant, all organisms naturally radiate to fill their niche. They are always testing the limits of that niche. Where there are many species, as in a tropical rain forest, competing for lush resources but trying to make a living in the same way, the size of the ecological niche will necessarily be very small, but out on the tundra where less species compete, the niche will be geographically larger. This is exactly the same situation as competition in an economy between start-up companies[3]. The company in an economy is analogous to the individual in a ecosystem or possibly a small social group, or better, a species. A crowded field will produce many superspecialists, a phenomenon which we see in computer or bio-tech fields in America, the tropical rain forest of economies. Economic speciation is intense and furious. But one species has arisen which has unfair advantage over all others. This is man. He is an omnivore and supremely adaptable to all conditions.  He may be seen to compete with other carnivorous species at the apex of the food chain such as tigers, lions, and hyenas, yet his diet is varied and level of invention  without bound. In latter times humans will have learned to domesticate and raise the animals they consume and eliminate the need for hunting and gathering altogether making the city, civilization, possible. As we have seen the major biological competitors for mankind nowadays are not other carnivorous species but bacteria and insects which challenge us by their pure level of bio-adaptation and short generation time that matches the brain's rate of bringing ideas to fruition.

 

Figure 1: Four species of antwrens forage in tiny habitats in a lush Amazonian forest at specific heights above ground.  10 species can occupy a single locale[4].

 

Humans are unique as a single highly sapient species that fills an enormous range of habitats and are distributed worldwide. Though he may rarely choose to do so, a Scandinavian may easily breed with a Hottentot. More importantly, as vividly illustrated by Jared Diamond[5]  in his book The Third Chimpanzee although some human groups such as the Australian aborigines may have been isolated and have had no exposure to modern culture and technology, their  intellect will allow them to integrate into modern society within a short time and even to fly our jet planes or operate machinery. Admittedly it may take them generations to fathom the meaning of the new technology they have easily mastered, which is the reason for so much war and strife in countries recently given their own autonomy with decolonization but they may take advantage of technological advances nonetheless. We are one species, the differences among us are literally skin deep.  Genetic studies show that we have separated and differentiated only quite recently in geologic time. Think of what might happen if the world were peopled with two or more sapient species especially if both were as self-serving and bellicose as our own. Or is it inevitable perhaps that sapiens should exist as a single biological entity? It is quite possible that once we had close rivals, Neanderthals or others that modern humans took out of the competition. Or perhaps circumstances, a long chain of accidental circumstances  led to our descent are so unique on earth, or even in the universe. This is the stuff of the anthropic cosmological principleY .  We are unique.

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The natural tendency is for any species to radiate, to expand its geographic and ecological base. This will make possible an increase in population and make the species less vulnerable as well. A wide base is more difficult to push or topple over.  Species spread out over a larger geographic area unless pushed out by other competing species or if they are simply unfit for a different habitat or if a boundary such as a large mountain of body of water prevents spread. Perhaps mankind, able to compete in many directions is sort of a jack of all trades while some other specialists may out-compete mankind in some limited sphere of endeavor. Human genius overcomes most habitat limitations. We are able to survive in the tundra or the Arctic as well as on the Savanna.  Geographic obstacles don't stop us anymore. We haven't spent long periods underwater and few of us make a permanent dwelling under the seas. Someday we dream about living on other planets perhaps planets around other stars but this seems a long way off. In the meantime we are testing the carrying capacity of the limited space we occupy on earth, as population is expected to top 8 billion by 2020.

Humans, by virtue of their ability to adapt to environments without having to make biological changes, with the aid of the brain in other words that makes them infinitely more adaptable, were able to survive in all kinds of climates and habitats.  They are widely successful because of not being limited by their biology alone. Then there is the wanderlust, which is an intangible, the sense of wonder about what lies over the next hill or the further horizon, curiosity breeds success.

We can only theorize about what gave one group an advantage over the other. They migrated or radiated separately.  When it came to Robust or heavier boned humans exemplified by the Neanderthals, they had their own migration and were widely successful in Europe and Asia, over a much longer period than whatever we are aware of in our proud later gracile human history which only spans a few thousand years.  When you think about it, nature was remarkably patient in our development, considering that life has existed on our planet for maybe 3.5 billions of years, hominids diverged from apes 5 to 7 million years ago,  the most advanced hominids for a long time, the Neanderthals and their thick boned relatives prospered 200,000 to maybe 35,000 years ago.  Over this long period of hominid development, there is little left for our examination except a surprisingly small variety of tools and some primitive burial sites.  Then there were modern humans who were around for 40,000 or so years.  Their tool making technology utilized bones, ivory and materials other than stone (finally) and we begin to see some cave drawing and other signs of abstract thought, later cuneiform and still much more recently writing with an alphabet starting about 3500 or so years ago. And it is only here in the twilight of our existence that we maintain, and I'm speaking of any extant culture now, that any of our gods saw fit to endow us with some code of ethical, moral or religious conduct, or actually declared themselves finally to men as wholly conscious sapient fellow beings.  Awfully patient were these supreme beings, whichever of them we believe in, to wait all this time and appear to us just now, when we finally have the faculty of understanding.  The latest human form, gracile attenuated,  light, fragile man.  A better more adaptive model, not because he's harder to break, but due to the fact that he can think better, learn faster, store information.  Gracile man is a repository of information,  more powerful than bone and sinew, information that can be passed down, superseding genetic information inside every living cell.  Other men need not start experience from the beginning, so there is no need to reinvent the wheel.  Finally it is possible to build upon the past to exist upon a ready-made foundation to stand upon the shoulders of giants. If he can write so much easier is it to lay a plan, to plan a society , build and edifice, do a painting, write a symphony rather than some hodgepodge of random ad-lib sound. 

Over the last 200 or so thousands of years,  forebears of modern men radiated into diverse climates very possibly emerging out of Africa, spreading the fertile crescent and thence into Asia and earlier than 50 thousand years ago, into Australia.  This latter journey was undertaken quite possibly on makeshift floating structures resembling boats by inordinately courageous folks driven into discovery of new lands that would support them.

 

 

 

 

 

 

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Carbon and Silicon Wed:

 

Carbon

 

Silicon

 

                           Figure 2: Schematic of  Carbon and  Silicon atoms not drawn to scale.

With Chemistry being a distant memory and unnatural subject for most of us,  few appreciate the implications of  the elements  Carbon and Silicon. Carbon and Silicon on the Periodic Table are in the same family of elements. Both have 4 electrons in their outer shell. Electrons don't haphazardly encircle atomic nuclei as planets orbit their sun. A star may have almost any number of planets of different sizes. At the level of the atom we are in the quantum world.  In the ordinary macroscopic world Newton's laws are a good approximation of reality,  not so in the atomic world of quantum physics.  Electrons occupy a specific kind of orbit called a shell.  Atomic shells distinguish themselves others by distance from the nucleus of the atom.  The nucleus  contains much heavier particles, neutrons and protons.  There are rules of occupation for electrons.  The first shell is the one closest to the nucleus and can hold 2 electrons.  If this shell is completely full in an atom that has two positively charged protons and two negatively charged electrons, we have an atom of Helium.  The atom with shells filled lives a satisfying but lonely life and  will not bond with other atoms.  This is true for so called noble gases, Helium is an example, which do not form a chemical bond.  Other elements bond only in  certain ways dictated by their outer electron shells. Carbon and Silicon are alike,  members of family IVa.  Carbon has the atomic number 6,  Silicon 14,  which is the number of positively charged protons that occupies the nucleus of the atom and positive charges need to be balanced by negatively charged electrons.  Now it is rule that a given shell will contain a certain number of electrons.  For the first shell closest to the nucleus that number is 2, for the second shell  8, for the third 18, each shell being successively  farther from the nucleus of the atom. The inner shells fill first as electrons are added. For a shell number, 1, 2, 3, and so on,  S, the number of electrons to fill that shell is 2S2 .

You can easily see that that for Carbon with 6 electrons,  four will end up in the outer shell which is the same as for Silicon with 14  (                           Figure 2).   Silicon has 3 shells in comparison with Carbon's 2. Silicon is a larger and heavier atom with electrons further removed.  Silicon's chemical bonding behavior is very much the same as Carbon's simply because the number of electrons in the outer shell of an atom determines its behavior when it comes to forming a chemical bond.  When two atoms bond, they  share electrons. They do so because in and of themselves they have shells or orbitals (diminutive for orbit) that are incompletely filled with electrons. To anthropomophize,  atoms are unsatisfied and need to associate with other atoms  in order to achieve fulfillment,  to fill their orbitals or shells. Noble gases such as Helium have perfectly filled electron shells and have no need to make an association with other atoms. They have a patrician and isolated existence.  Other elements are unfulfilled in and of themselves.  Many of these associate (bond) extensively.  Carbon and Silicon are in the latter class.

 

In consideration of their unfilled outer electron shells one of the things both Carbon and Silicon frequently do is bond with four other atoms.  In so doing Carbon or Silicon will share an electron with each. A perfect atom to bond with is another copy of itself, Carbon with Carbon or Silicon with Silicon each achieving the happy status of 8 electrons in its outer shelly .  Either Carbon or Silicon will form a perfect crystal by latticing in this way as can be seen in  Figure 3.

Figure 3: The crystal lattices of Carbon and Silicon are similar- By sharing electrons each element gets 8 elecctrons in its outer shell.

 

Carbon is a social element.  It bonds with itself extensively and most importantly not as a crystal lattice structure as illustrated above but in chains of  double and single bonds   Carbon also associates extensively with other elements, particularly Oxygen, Nitrogen, Sulfur and so forth, even with metals such as iron in hemoglobin.  Carbon's repertoire of covalent bond association is truly amazing.   This is organic chemistry of course,  the chemistry of life. It's important to realize that all of this, all life, is made possible by chemistry and physics, the quantum properties of the element Carbon.   

 

If Silicon is the same as Carbon, then why is there not Silicon based organic chemistry, Silicon life?  This is the stuff of science fiction.  Maybe somewhere on our planet, perhaps on other worlds there might be organisms based on Silicon chemistry.  Well, Silicon is not the same as Carbon. Silicon can form chains with itself but partly owing to the larger size of the silicon atom, Silicon-Silicon chains are unfortunately not very stable.  By  virtue of its being a larger atom and because of other properties of chemical bonding Silicon life does not appear to be  possible.  Just one example is in the way Silicon bonds with Oxygen.  Carbon and oxygen associate extensively and in a variety of ways.  The simplest relationship is Carbon dioxide, a gas whose properties are taken advantage extensively in organisms in energy storage and respiration.  CO2  is cycled by plants which fix it in sugars that store energy for almost all forms of life and produced in the respiration of animals and plants.  SiO2 , Silicon dioxide, is totally different. It is a solid, not fit for any respiratory cycle, a crystal, the formula for glass, sand, and quartz. Carbon dioxide has a double bond between Oxygen and Carbon, Silicon Dioxide a single bond and it forms another stable crystal lattice (Figure 4).

 

Figure 4 Silicon dioxide is the formula for glass. sand, and quartz.  It has a  hard crystalline structure in in which Si bonds with O with a single bond in contradistinction with Carbon Dioxide which is a gas with double bonds to O.

 

The Silicon crystal lattice has other interesting properties that make it useful.  It forms the basis the current semiconductor industry, the heart of  computer electronics.  As we have seen the Silicon crystal lattice is essentially the same as Carbon's.  Life does not utilize Carbon crystals, but takes advantage of Carbon chains.  Silicon crystals on the other hand lay the basis for the semiconductor industry. Silicon wafers may be 'doped' with impurities especially Boron, with just 3 electrons in its outer shell, and with Phosphorus, with 5. The impurities add an extra electron freely  mobile within the structure in the case of Phosphorus doping making it negative (N-Type Silicon).  Boron doping will create a deficiency of one electron giving a free positive charge (P-type) which given the motility of negatively charged electrons will create a semi-conductor, the basis of all computers.(Figure 5)

 

Figure 5: Silicon crystal may be "doped" with phosphorus which has a fifth electron in its outer shell,  or with Boron with 3 electrons. The free extra or deficient electron creates a negative or positive charge  freely mobile inside the crystal making it a semiconductor.

 

 

 

The interesting part of all of this is that P and N type silicon are conjoined to replicate electronic components, diodes that allow current to flow in only one direction, and most importantly transistors, which act as electronic switches. Transistors acting as switches or gates are always either in an open or a closed state, allowing or disallowing the flow of current.  This is the binary state as discussed in Chapter one of the computer which processes series of 1's and zeros in binary code, also to some extent neurons too, which at any time are either firing or not firing. Other impurities including Germanium, and other elements and even Carbon, can be added to the Silicon crystal lattice or wafer which may be used to make the wafer size even smaller and enhance electrical and storage properties. This aspect of materials science, the creation of a better Silicon device is explored mainly in U.S. and  Japanese laboratories. It is extremely basic and important research which has the potential to, multiply storage  capacity, increase miniaturization and speed of computer devices.  The interesting thing is that Carbon and Silicon do not readily form stable crystals together on the same wafer device, though these limitations may someday be overcome.

Transistors replaced vacuum tubes, which served the same function,  during the 1950's. I recall going with my dad to the drugstore to get vacuum tubes tested. We'd suspect a tube was blown when a table radio or television stopped working and  a tube didn't glow.  Usually we were right. When I was very young transistors replaced vacuum tubes. Transistors were a lot more reliable and never had to be replaced.  Transistor radios replaced the larger table versions and we could take them to the beach. Most were advertised according to the number of transistors, 4, 6, 8 or 10.  The more they had the better was the reception because transistors primarily served as amplifiers of  the radio signal.

The very first computers were mechanical not electrical contrivances.  They were bulky and could only do limited calculations due to errors in mechanically setting dials and gears and the inherent slowness in mechanical gear motions.  Mechanical computers are analog devices with inherent inaccuracies.  When you look at your analog watch with hands that point at the time, you can only estimate the exact time. Inaccuracies will multiply with a large number of arithmetic operations in any analog mechanical computer.    The great mathematician Wilhelm Leibniz the co-inventor of Calculus, built a mechanical computing machine in 1672 , writing presciently, "For it is unworthy of excellent men to lose hours like slaves  in the labor of  calculation which could safely be relegated to anyone else if machines were used."  The first modern computers were conceived in the early 1940s used to figure artillery shell trajectories. The Mark I used electromechanical relays as on-off switches that opened and closed utilizing an electromagnet, a relay. The machine was useful but slow because of its mechanical nature.  What was needed was a pure electrical device.  The next advance was to replace mechanical switches with vacuum tubes. As we have seen the ENIAC computer used in the war effort to help develop the H-Bomb had 17,468 vacuum tubes and weighed 30 tons. The computer size decreased, speed, power, and economy increased with advancements of methodology and hardware.  The invention of the transistor was a revolution.  Transistors are much smaller, more reliable and generate less heat.  Next came integrated circuits in the '70s and '80s and finally the Silicon microprocessor. Computer speed is measured in FLOP's , floating point operations per second. The Mark one could do one operation in 3 seconds working at the speed of .3 flops whereas the fastest modern computers work in the teraflop range (1 trillion flops). This increased speed  derives roughly from  product of the number of switches and the speed of switching.  Computers with 10's of thousands of transistors became possible with the demise of the vacuum tube. But the biggest advance was the microchip made of Silicon on which you could place the equivalent of thousands of transistors in a small space. A simple flat transistor element may consist of a juxtaposition of N-P-N or P-N-P Silicon on a wafer. Complex circuits could be etched on wafers and mass produced.  Parallel arrays of Silicon be used to create machines with incredible computing power[6]. Tiny light beams of different electromagnetic frequencies etch smaller and smaller patterns on modern Silicon wafers and there is a race to develop and use this technology to mass-produce smaller chips with the equivalent of millions of  flat transistors.

We all  know what modern computers can do. Younger persons can barely imagine life without them.  Elementary mathematics curricula use calculators.  Consequently some children are not able to calculate without a machine. But we all depend on computers in our daily lives.  They extend and expand our abilities.  Even if we can figure things out on our own,  especially if we can, calculators do figures much faster and free our minds for more abstract tasks. For advanced students of mathematics the scientific calculator is commonplace and leverages abilities.  Task specific machines are analogous to other machines which extend abilities and function as tools. A man can't run very fast but is able to travel faster than the speed of sound in an airplane. While our body limits us, we can only get our legs to propel us so fast, still we dream of  making past these limitations and our will  takes us so much farther in a lot of instances.  A man is quite limited in his  ability to dig foundations but this task is made amazingly easy with heavy equipment. The computer is no different. It's becoming an indispensable tool. Those who have it and have more powerful than those who don't and so computers proliferate. There are those with advantages of wealth and other comparisons of cognitive power.  There are two kinds of persons, those who have computers and those who don’t.  The haves will outcompete the have-nots every time.   Armed with computers humans learn faster and will undoubtedly out-compete those who don't in such diverse areas of endeavor as  learning, business and war.   Men with the most modern tools will generally perform better in the same way that an army with modern weapons, an air force with the latest equipment and so forth. The computer is a tool, similar to a backhoe or a car or jet plane but with a catch.

Computers work not in the mechanical world so much as to extend understanding.   As long as they are simple single task machines such as calculators, and graphers or game-players, they simply extend human abilities just like any other machine.  But a multi-task machines that can calculate, search libraries of information and retrieve data, process words, recognize and produce speech, all with great fluency and accuracy,  start to look very human.   The Silicon wafer has made all of this possible.

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A lot of people have begun wonder about the computer's ability to think.  Will it be possible in the future, perhaps by virtue of advanced processing and brute force, power, increased computation speed, increased number of Silicon transistor equivalents, parallel arrays of processors, for Silicon machines to "think" or even become conscious beings?  Today computers  function merely as extenders of human capacities, as slaves.  They don’t initiate thoughts or actions and seem unable to feel or experience. Computer characters that function as human equivalents are by now deeply embedded in American culture, from Hal in "2001" to R2D2, and Data in Star Trek. Spock was a descendant of computer in earlier science fiction genres.   Computers seem not even to have the will to live, fear of death, that we know occur in the smallest brained birds or rodents, certainly not those of dogs or dolphins, but who can tell what will be in the future with the explosion in computer technologies?  Is a complex biological Carbon-based structure with nucleotides, proteins and all the complex chemical structures that go into making a "living" organism  a necessary ingredient to true consciousness or can this cognitive outcome be achieved differently?  No one knows.   Some of us suspect consciousness, whatever is meant by it, as sensed by us, will never be achieved by a lifeless Silicon based apparatus. Were we to make Silicon machines that thought and felt as we do, then we would be as gods creating as "second generation"  of thinking initiating beings viz. "Let us make man in our own image" replicating biblical creation.

Would humans be able to exist alongside sapient silicon based computer beings endowed with their own free will?  Inevitably each superior cognizant being would be challenge the other for dominance. Wars would be fought. One being would inevitably replace the other much as Cro Magnon replaced Neanderthal.   And one would end up winning out, maybe wiping the other off the face of the planet. It would be a war between the elements Carbon and Silicon, the former sapient alive with blood flowing though its veins, the latter made of cold sand and glass.  For the foreseeable future, Silicon serves Carbon. Silicon is a lifeless tool, incapable of strategizing, a planning without a destiny of its own.

As an interesting sidebar, it would seem, that it would be virtually impossible for two sapient species to exist side by side. Endowed with free will, each would inevitably protect its own interest and there would be wars for supremacy. This is what we’ve experienced throughout our own history, where intolerance inevitably occurs between races and nationalities.  We’ve seen so many fights break out between sports fans from different cities, in competition between colleges, annihilation of populations and world wars.  Smart aggressive beings will always  crave dominance.  What is the wisdom of actually seeking other intelligent beings from outer space as envisioned in the SETI project?   If such intelligent beings exist, and this may be likely, they will inevitably be somewhat different than humans and we there is certain to be an altercation between them and us. Under ordinary circumstances, it is so difficult to see humans and aliens just sharing common wisdom. That scenario would seem more than a little naïve.

Human expertise in creating computers is advancing rapidly. Yet it would seem our ability to create willful sapient Silicon beings is just as much of a longshot as our finding aware and alive aliens in space. This is all for the best because such “Contact[7]” is far and away most likely to be destructive for both sides. 

The picture I’m presenting is the computer as a tool, an unfortunately lifeless, car, plane, gun, backhoe, extender of human abilities. And it's striking that as circuitry advances, as computer chips get ever smaller and more powerful, that humans and computers begin to work as close proximity,  hand in hand, that we have become ever more dependent and are living closer with our computers.  This is an observation that seems rarely to be made, but it is what I call the marriage of Carbon and Silicon. What has made the intimate relationship between humans and computers possible?

First of all the tininess of the Silicon chip.  Not too long ago they took up buildings or rooms, now mostly desktops or even smaller spaces.  Secondly everybody has access to them, whereas in the not too distant past they were tools for the elite who where using them for a single purpose. Today's machines multi-tasked and small, portable most of the time, and all of us depend on them. We  have an intimate relationship with them.  There is one everywhere we work.  For some disabled persons, computers replace damaged parts. Persons who cannot speak use computers to express themselves. Some of these folks can merely type messages. Others use machines that interpret impaired speech.   Silicon devices can be made to stimulate the  human cochlea. Here is the scheme.  Surgeons implant a device with multiple electrodes into the human cochlea.  The cochlea normally translates sound vibrations into electrical impulses  which is what the brain can process.   In persons with nerve deafness, this cannot occur.  This array of electrodes placed in the cochlea makes possible the direct electrical stimulation of nerve cells.  A tiny microphone is used.  Microphones normally change sound into electrical energy but the microphone is connected to a computer that alters electrical data according to multiple paradigms so as to ease interpretation by the brain. Then a tiny radio device transmits this information to the implanted  cochlear electrodes.  The nerve-deaf subject, especially if he is a child, can learn to process this altered information and hear, maybe for the first time. The deaf are made to hear. This would not be possible if the computer were some giant device.  As things are, the computer device is somewhat large, close to palm sized,  but may be place in a pocket or belt. Such devices raise some alarm in the deaf community.  Deaf persons sense that they are different, a special minority, a group unique unto themselves who communicate by signing. Few hearing persons know sign language so that the deaf can send private messages.   Some of them aren't so sure they want this uniqueness taken away with an electrical device. But cochlear implants are not for every non-hearing person anyway. 

A paraplegic patient can be made to walk.  These are persons whose spinal cords are damaged by trauma for the most part, whose legs are paralyzed.  Very simply, one places electrodes over large leg muscles.  When an electrical impulse gets to the muscle, it will contract, moving the hip, knee or ankle. A Silicon computer device controls the succession and amplitude of the electrical impulse in very much the way that they are progress within the spinal cord first to anterior tibialis, then quadriceps then the gluteus maximus,  then the gastrocnemii,  then to the iliopsoas on the opposite side, and so forth to produce a functional gait. Someone who is wheelchair confined and highly motivated may be able to get up and stand, first of all, and then walk, usually short distances.  Other persons use electrical stimulation to prevent muscle atrophy.   In paraplegics lower extremity muscles languish unused and wither away.  Electrically stimulated muscles are made to contract against resistance and can rebuild muscle mass. Here as with the cochlear implant, the Silicon device itself isn't actually implanted, but is carried about, outside the body.

A patient with intractable right hand tremor can have a pacemaker wire implanted in his left thalamus which helps control the hand.  Tremors can obliterate normal functioning movements and turn a dominant hand into a useless liability.   A person may be unable to feed  or to write. The thalamus is a bundle of nuclei.  Each nucleus in the thalamus is an anatomical grouping of neurons. The sinus node and a-v node of the heart each have an intrinsic rhythm and drive the rest of the heart to beat at a specific frequency or rate.    Many thalamic cells also  fire with an intrinsic rhythm at a specific frequency. As we saw  earlier,  this rhythmicity drives the rest of the brain determining  the state of consciousness, whether we are  asleep, awake or in REM sleep.  Intrinsic thalamic rhythms also drive motor systems. In motor systems this driving rhythm causes a tremor under certain circumstances.  In just the same way that a pacer may be placed in the heart, a neural thalamic pacer is used in the brain to overwhelm the pathologic rhythmically firing neurons that cause tremor.  The device needs to be placed in  thalamic VIM or ventral intermediate nucleus of the thalamus. The pacer can be turned on and off, and set from the outside with the use of an electromagnetic control.  Just like a cardiac pacemaker, it is implanted, along with its wire, into the chest wall just under the skin. Alternatively this abnormal intrinsic rhythm is lesioned with a probe that will take out the VIM nucleus or via a gamma knife radiation. This is a simpler way of ending pathological rhythmicity that causes tremor.

Physicians literally “reach into” the brain every day. Some stupendous examples involve replacing poorly functioning brain cells with new ones.  In Parkinson’s disease immature (fetal) midbrain cells and also cells from the adrenal medulla that secrete Dopamine, the transmitter deficient in Parkinson disease,  are implanted into the brain with some success.  Therapeutic fetal  brain cell transplants are being tried in such diverse disorders as stroke, which results in the death of brain cells, and in spinal trauma[8]. These techniques are being tried on a practical basis,  without anyone even noticing their philosophical implications. Scientist clinicians are reaching into the brain to treat disease and improve function. In doing so they are taking furtive steps beyond the limitations of biology; they are unbinding the patient from his biological limitations.  They provide the proof that the patient, and any person adds up to much more than his own biological limitations.  Though of course the victim of Parkinson disease or stroke is unable to operate on himself, he is the beneficiary of a communal level of knowledge or expertise.

Inevitably similar techniques will be used someday to maximize physical and mental performance. On a rudimentary level, stimulants and hormones increase atheletic performance in competitions around the world every day.  Drugs, antidepressants among them, improve function in day to day living by their chronic effect on intrinsic neurotransmitters. Silicon devices add precision in drug delivery.  Precise fixed amount of drug is dripped into the spine using a technique that has become commonplace today. Baclofen is delivered directly into the cerebrospinal fluid to inhibit neurons and control spasticity or pathological tightness, resistance to motion in muscles.  Spasticity often results from spinal injury from trauma, birth injury and such diseases as multiple sclerosis which prevent the inhibitory controlling impulse from higher areas of the nervous system from reaching the spinal cord.    When you give large doses of Baclofen by mouth, which causes a lot of side effects, very little of it gets into the brain and spinal cord where it must work. It may be excluded by the blood-brain barrier.  Given intrathecally, directly into the spinal fluid, the results can be stunning.  Suddenly a person formerly unable to walk, can get up on their feet. Others in a bed-ridden contracted state are finally able to stretch out and move.  Similar pumps are used to deliver narcotics to control intractable chronic pain, to dose insulin and other drugs requiring precise titration schedules.  It means the difference between functional vs. non-functional life.  Tiny Silicon wafer circuits have made all of this possible and for us to begin to ask where does the living Carbon based biological system end, and lifeless Silicon begin,  proving again that we are far more than our biological machine which is our body allows us to be.  Devices are born of a dream or a conception but are made into reality.

 

                                                   Figure 6: cochlear implant device.

Figure 7: Electrodes place directly on muscle stimulate it to contract. Computers control the order in which muscles contract to produce stance and gait.

                                     Figure 8 : A pacemaker for the brain controls  tremor[9]

We all use keyboards and pointing devices such as the mouse and trackball, and joystick.  But the problem is that in order to communicate with a machine which is separate from ourselves we need to translate our desires into a form the machine can understand.  A lot of steps impede the direct transfer of information. This relationship needs to be more intimate. By this I mean  that what we ultimately need to achieve is full incorporation of Silicon devices into our brains to communicate electrically with the relevant tissue and improve and expand upon normal function.  When we use devices to overwhelm a disability, that is just practice for situations where such devices would really be useful, namely the elaboration and expansion of normal human capacities. As we have seen computers far surpass the human brain in two important areas, information storage (memory) and speed of calculation. Memory and retrieval of information is not trivial. We have seen that memory intimately ramifies with all other areas of cognition. Libraries of data are stored in smaller and smaller space.  Soon optical systems may store data in three-dimensional arrays. They will make our compact discs that already store whole encyclopedias or shelves of books on one small disc, seem large by comparison. Information will also be infinitely more accessible, easy to call up with the aid of infinitely more mnemonic "handles" than even the living brain is able to provide, not only logical knowledge categories, but by spelling and phonemic and positional classification schemes.

Far more sensitive input devices will be necessary.  Hopefully, cells and Silicon wafers will make direct electrical connections as both systems work via the transfer of positive and negative electrical charge.  Presently devices are touch pads, joysticks and electrodes placed about the eyes that sense the field of gaze in eye movements.  These may be useful for fighter pilots for faster communication with a precision machine and in virtual reality games. Electrodes can be placed on any electrically active surface to gain sensitive feedback, for example in muscle where the state of relaxation or contraction can be monitored by computer, analogous to proprioceptive input into the brain.  This data can be used to control movements for athletic movement or to modify accelerations in machines used to carry people.  A computer commanded by eye movements may make rapid communication possible for the first time in patients with the locked-in syndrome (See Chapter One) who are unable to move anything but their eyes and otherwise are awake but can’t communicate. Some persons with severe forms of cerebral palsy and acquired neurological diseases may benefit.   Perhaps EEG activity and distribution may be used to communicate with Silicon devices that can easily recognize patterns and spatial distributions of brain electrical activity.   Such devices may someday be used to stop abnormal electrical discharges such as epileptic seizures,  but more importantly sense and control brain waking an sleep rhythms on long trips such as space journeys.  These devices amplify command and control, the efferent side of neural function.

We use many devices on a routine basis to extend the afferent powers. Infrared and other detectors extend our sensitivity to signals and energy sources that as biological organisms we haven’t receptors for, electromagnetic energy outside the visual spectrum.   These devices are mostly used in war and for night vision as in hunting but detectors on earth and in space have multiplied our powers of observation. Astronomers observe today in all parts of the electromagnetic spectrum, infrared, at radio and gamma frequencies,. analyze and collate with the aid of computing machines. In the not too distant future we can expect more devices to directly stimulate nervous tissue, to expand sensory function in much the same way as the cochlear implant does, and enhance tactile and visual function as well.  Predictably these may at first to treat the blind and sensorily deprived, but one day they will be used to extend the sensory function of normals.   We will have Silicon devices surgically implanted, some  directly into the skull and brain.  These devices will extend our sensory abilities,  improve motor function,  increase our memory and augment cognitive function.   They will be sensory, mnemonic, cognitive, and motor enhancers and extenders..

Of course, everyone depends on  Silicon devices to extend capabilities. Silicon devices calculate, write, retrieve and store abundant information. In selected situations as miniaturization progresses these devices may be implanted. Carrying small notebook computer devices around with us as we do even today is tantamount to implantation anyway. Our relationship is growing closer to these digital assistants that a lot of us couldn’t be without even if we ended up on a desert island.  These communication devices extend our capacities.  With cardiac pacemakers and implantable defibrillatorsF being so commonplace today, we joke that the cardiac patient implanted with such a device is indestructible, he is prevented from dying.

The argument that we humans are nothing more than our biological endowment succumbs then to the power of human invention.  Expansions of human abilities and possibilities that are even now possible in the computer age.  We are more than our biological endowment allows us to be, we have become more because we have dared to imagine. Our inventions have had us escape our own innate limitations.  We have hatched out of our biocapsule.

Carbon and Silicon are ever more being tied together. They are married. The result is an exponential growth of human capacities.  Computers have done far more than affect our daily existence. Subtly, slowly, they have altered our philosophy, have changed the way we see ourselves. Firstly, as I have been saying, we are in no way limited by our own body our biological endowment.  That is a tremendous realization. More than that has changed. By some reckonings, the sum total of human experience that is a life can be boiled down to a huge quantum of information. This is a legitimate claim.  The next time you talk to your spouse or an acquaintance, or any other person, what you see before you will fundamentally change from a clothed body and face that you recognize, something material, to a package of  non-material ideas, perceptions, and actions, something immaterial in other words.  What resides in your brain right this moment, the effects of all of the memories and experience which are part of your life, is expressed in the form of information. 

Suppose we could set all the electrical activity in all of your brain cells at exactly settings that are there at this moment which we designate t0  , then recorded also the exact anatomy and array of synaptic connections, also the placement and composition of all cells and substances such as proteins and nucleotides within cells, this is just information, admittedly an awful lot of information, but the point is that it can be stored in machines designed to store mountains of data. If we have all of this data stored in a Silicon device, we have an essence then of what a person is at that specific time t0 and presumably have a good handle on what is to happen at t1j . What's more an essence, expressed as information content, is separable from a biological entity not unlike a soul in religious parlance.

Perhaps more importantly the integrated consciousness that is a person and more will represented in a "second generation" inside a Silicony device.  Whenever our civilization has advanced far enough, and this will not be anytime soon, all information should be carried by vessels that are non-biological.  Someday we will be fully developed as non-biological beings, capable of experience well beyond our current limitations, sensitive to vibrations along all areas of the spectrum, vision in simultaneously infinite projections, enhanced tactile sense and epiphanies of emotion such as those never experienced by any one with paltry biological endowments. What is important is that we will reach this stage, and I have every confidence that we in fact will, in spite of our limited abilities and because whoever or wherever we are, we have an inner drive to reach beyond our limitations, we  crave more knowledge and we  dream, we want always to reach out and experience more.  We are material yes, but there is some essence that is not expressed in material terms. I would ask this question. Have advances in twentieth century science proved that we have a non-physical essence then, what is indeed a soul?

You might point out that in fact,  this inner essence is already recordable, though not with precise fidelity, in the form of books and other recording devices that we leave behind, long after our body has disintegrated.  You'd be right of course, we can always see a performance from a deceased actor, or listen to a recording of a singer or conductor at any time.   The difference is that while we leave  ideas, performances,  pieces reminiscences of ourselves, after we are gone, we haven't yet evolved a technique to preserve and make immortal the human experience that built into every Carbon-based living human creature.  We are witnessing a performance, experiencing ideas, but the person "larger than life", is no longer is experiencing or living the part.  We've not yet evolved a way of preserving intact, consciousness. 

If you still maintain that there is nothing to humankind except biology there is yet another means of attack on this assumption. Through mastery of genetics we will soon find this biology in and of itself is a moving target. Genetics too can be reduced to information transfer and manipulation. Genes are nothing but the biochemical transference of data. Most of the time this information is transferred vertically from one generation to the next but more and more, as we are learning, information gets transferred in other ways.  As we have already pointed out, neither simple cell division nor reproduction is designed to replicate with complete fidelity,  a critical point that is usually lost in basic texts on the subject.  This happens despite the fact that on the molecular level DNA is copied with amazing accuracy and speed. Animals and plants reproduce, yes,  but they  do not make exact replicas of themselves. Children are not clones of their parents. That happens more because of a reshuffling of genetic material that occurs in mating, but occurs to some extent among organisms reproducing by simple fission as in bacteria and protozoa. Variation between individuals is the raw material for evolution and each individual is an experiment in survival and fitness.  Another example as we have seen is in the embryo where, by rights, through simple DNA replication, there should result in a huge number of identical cells. Embryonic cells differentiate despite their identical genetic complement, because of differences in expression translation into proteins.  The embryo begins as a zygote which as a single cell reproduces by faithfully copying DNA so that each new cell will have its own supply of an identical product.  But as this cell division takes place, cells differentiate and specialize so giving rise by embryologic development to a whole organism, which often contains hundreds of different types of cells. Therefore even the simplest forms of biological reproduction are not one hundred percent faithful, and this residuum of difference is what makes biological reproduction a truly unique enterprise.

Genetics is the key to manipulation of life for our own purposes. It is hard to believe that the structure of DNA the molecule that carries the bulk of genetic information,  was elucidated only in 1953. This is one of those seminal practical discoveries akin to Hubble's discovery in 1929 that M31, Andromeda, was not just a "nebula", or cloud of gas inside our own Milky Way galaxy, but a separate galaxy that contains its own stars, thus implying that  many of those smudges or nebulae, are actually other galaxies equivalent to our own.  Many of these galaxies contain hundreds of billions stars.  This single discovery miraculously expanded the field of human gaze.  Suddenly God, if there was a God, was not God of the world, or of the Solar system, or even of the Milky Way,  but the God of hundreds times hundreds of billions of solar systems, a god of a wider cosmos than had ever been imagined by any of our ancestors, and all of this at one fell swoop.  The study of genetics opens up similar possibilities for us, only here we are gazing inside or ourselves.  Few persons will ever realize the full implications of Hubble's discoveries just as very few can apprehend the secrets  and full implications of the new  genetics.

New discoveries in genetics will allow us for the first time to manipulate biological reality. The genetic code is the Periodic Table, the Grand Unified Theory, of Biology.  Scientists are discovering that genetics is far more complex than they imagined, the more they discover the more complex the phenomenon their work becomes. As it turns out, if you know the all about the chemistry of reproduction of the DNA molecule you still understand very little about the myriad ways this technique is used in nature.  Nature is extremely inventive.  But there is not doubt that we will be able to design a different human form and  pass down this change.  That is why when I see a movie about men in the distant future, say the year 2100,  I can be confident, men won’t look or think like that the way they are always presented like current modern, humans.  People will be fundamentally changed in the future, in form and function, of that we can be certain (that is if we don’t do ourselves in before that, and I doubt that will be the case.) We will make these changes according to our own will and won't any longer be subject to biological serendipity.

Our basic identity at this stage is known.  We know what a human is.  There is little confusion about the basic form or shape of a human person that has two eyes, a head, a trunk flanked by two arms and two legs.  But think one day what it will be like when we are able to change this form, as will some time inevitably be the case. Suppose someone takes the decision that some persons should be specialists at working at a desk and that these would be better shorn of their legs and perhaps with shorter arms and longer fingers to fit keyboards. Or perhaps there should be generations of professional basketball superstars for our entertainment, with small cerebra, large cerebella, and long legs and further that these features should be passed down through generations.  A great confusion would ensue about what is the human form and at the very least about what specific physical characters make a person.  As time goes on the human morphology will change dramatically and there are likely to be humans of many different varieties,  endowed with a  special function perhaps.  These changes, for better or for worse, will be premeditated and planned.  Living long enough, or coming back in a time machine we would not recognize our own descendants.

(Humans will undoubtedly be able to change their own form by genetic manipulation. At first this will start with the elimination of undesirable traits. Mutations for such disorders as sickle cell anemia, cystic fibrosis, Tay-Sachs, Hurler’s syndrome, Huntington disease will be plucked from the human genome or strands of DNA that correct for these disorders will be inserted.  The consequences of performing these acts may not be so great, though there are effects we will fail to  predict. Along these lines we will inevitably discover that certain traits, especially personality traits, are genetic. Homosexuality, alcoholism, even hypochondriasis, anxiety and panic disorders will be found to be monogenic or polygenic traits. Already scientists have identified certain genetic types that increase risk for various cancers, especially mutations in tumor suppressing genes, Alzheimer disease, atherosclerotic stroke and heart disease, diabetes, and immune disorders such as rheumatoid arthritis and multiple sclerosis.  These traits can be tested for and will soon be used as fodder by medical and life insurers to exclude or rate prospective customers.  But techniques for genetic manipulation, the elimination of such disorders or DNA strands that predispose to disorders will inevitably occur.

As if this weren’t enough, along the way scientists will uncover certain characteristics that increase math or literary prowess, spatial ability or general intelligence.  Traits for height, muscle development, speed, physical attractiveness will appear in scientific literature along with the technology to alter or mix such traits. Inevitably we will plan to raise super movie stars, soccer players, physicists or some combination of the above.  Perhaps we will seek to eliminate psychological traits such as self-doubt, guilt, anxiety that might be conceived to get in the way of accomplishment. In some cultures then, particularly in cultures where there was sufficient wealth and expertise, the human form would change.  By the year 2100 or so people would take on different characteristics.  They’d be untrammelled by any anxiety depression or guilt.  You would see more men over 6 feet tall, with large muscular biceps and thighs, bred in other words for increased sinew and intelligence.  The marathon would be run in an hour and thirty minutes, and the brains would create unparalleled works of art and science.  Perhaps professions would be decided at conception rather than allowing a person to gravitate into the way of life that he is inclined to. 

This is a fanciful yet highly likely peek into the future. Very little will be left to chance.  The future of the human race would proceed by design, by careful planning, in other words.  What is likely to be the outcome of such planning?

Linkage is a basic genetic concept.  Genes on a chromosome are either close to or far away from other genes. Recall that  a gene is defined as a strand of DNA encoding  for a single protein. In this manner traits are linked to each other which means in practical terms that they are likely to occur together because they are close on the same chromosome.  As DNA is moved from one cell to another certain traits are very likely to be moved together at least at first, before techniques get precise enough. But this is a technical obstacle that will be overcome. Another more difficult problem that will not be solved so easily is that genetic traits, single genes,  have multiple effects. The sickle cell trait doesn’t just cause sickle cell disease. It protects against malaria, and the Tay-Sachs allele may well have done the same for tuberculosis. But even this is not a particularly difficult problem.  However, protein gene products inevitably have multiple effects in many systems.  If you want more or less skin pigmentation, you in an attempt to make sexy blondes or dark skinned virile males there will be fallout affecting other propensities as well.  Suppose you find a trait giving rise to large muscular thighs and calves for future soccer players, you will find that many of the proteins giving rise to characteristics of muscle, also affect brain cells. In fact muscle proteins and enzymes have a lot in common with proteins inside the brain. Muscle and brain diseases have some common genetic characters.  In other words you may alter mental characteristics in many ways that you didn’t bargain for.  Genetics is far more complex topic that is dreamed about in our philosophies.  One single trait even in isolation will undoubtedly affect hosts of other genetic characters.

If we try to alter the natural order of things, we are inevitably going to get into some trouble.  The best analogy I can think of though admittedly with something a great deal less complex, is the economy.  In our world today we see various kinds of planned economies, and more or less natural laissez-faire type systems.  The best example of a top-down planned economic structure is the Soviet type economy, now pretty much universally accepted as a dismal failure.  Lenin said, in essence, let not the market place determine the production and distribution of goods, but have the state determine what will be best for everyone by design.  Decision would best trickle down from the top. We, the politburo,  will determine how many shoes will be necessary, tons of steel production, farm implements, beef and pork.  Actually as things turned out the Russians ended up eating most of their horses and still starved by the millions, making int possible to state cynically why leave anything to chance when we can rely upon the human frontal lobe? One problem with this scheme is that various constituencies sought to gain personally from state decisions.  But what really killed the system is that even in something so simple as an economy, there is an inestimable number of interactions to thwart any planning mechanism under the best of circumstances. 

Indeed this is what happens to us every day in the practice of medicine.  We are aiming to control the body’s function by design. In the Intensive Care Unit we try to control fluid balance, heart rate, cardiac output, blood pressure, level of sedation -  hosts of factors.  The aim is to leave nothing to chance. Yet “chance” events, shock, cardiac arrest, cerebral hemorrhage among them, do occur and at such a rate that under most circumstances even with intensive nursing and monitoring,  it is impossible to predict what will occur even a minute after an examination.

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Which leads me to again ask the question: How do systems function better, by human design or by serendipity?  In previous chapters we wondered whether insects and bacteria, which change randomly and rapidly adapt by natural processes would eventually win over humans endowed with intelligence. Complex systems with numerous rapidly interacting nodes, the economy,  genetics, biology, nature, will be difficult perhaps impossible to master at any time even considering advancements in cognitive and computing powers that will come under our control. Note here that I have deliberately skirted the issues and fears in the area of bio-ethics that arise whenever we talk about manipulating genes.  The most basic bio-ethical issue is will we in fact be better off after manipulation of our own genome. 

The most powerful argument of all in plans for genetic design is that the human organism has already evolved via recombination of thousands genetic traits.  Why haven’t we evolved that perfect six foot stature with large thighs and perfectly functioning brains.  I believe that looking at the whole system, where the human is biologically at this time, we will discover that the situation is close to optimal.  We still have abundant genetic variation, the raw material for adaptation increase fitness and evolution. My guess is that even some genetic imperfections will be found to have widespread positive effects which have escaped our notice. Perhaps some very disruptive traits such as Huntington’s disease can finally be eliminated.  It is important to note that from the population geneticist’s standpoint, even very injurious traits marking a person for severe disease, must have some adaptive fallout that confers an adaptive advantage, perhaps to the heterozygote, but an advantage nonetheless. Huntington families tend to produce more children and the disease affects persons after their child-bearing years, so the gene “survives” since it does not demonstrably decrease fitness. May there be other effects that accrue from eliminating this gene that we don’t know about. There probably are.)

 

Genetics is a mechanism to transfer information vertically through generations, from parents to their offspring. Genetics comes from Greek roots meaning to produce or origin or birth.  Nucleic acids as the biochemical substrate of genetics, have acquired a broader context merely as chemical information which under normal circumstances in the living organism, can amplify and reproduce. Genetic information is used more broadly than simple inter-generational transfer primarily in natural reproduction. While a particular set of genes defines a species or variety of organisms genes and groups of genes are readily transferable to other animals or plants. A particular gene encodes for a specific protein product.  But the gene and the protein produced are readily donated to other organisms, in which case you may say we have produced a certain hybrid and you would be right, except a hybrid is formed by mixing nearly equal moieties of genes from each parent most of the time. 

Today it is possible to transfer a gene from one species that has it to another that does not.  Think of a gene as the instructional code in the language of a chain of nucleotide codons to produce a chain of amino acids that is assembled into a protein.  Every cell of every animal and plant and even bacteria, contain the machinery to translate this genetic code, into real proteins.  The information that defines all living organisms is in this universal genetic code.  There is no reason why data from one organism can't be placed in any other given simple technology. Viruses do it and provide a model for information transfer. (Figure 9). The bacteriophage is a DNA virus that infects bacteria.  It inserts viral DNA into an unsuspecting bacterium, which will then reproduce it and make new viral particles.

Figure 9: Action of  bacteriophage, bacteria infecting virus as a model for viral transfer of genetic information into cells[10].

Figure 10: Schematic of HIV, the AIDS virus, infecting a cell and reproducing itself, a  general model        for  viral infection.[11]

 

The simplest examples of gene transfer thus occur in nature. A virus is made of a strand of DNA or RNA enclosed in a protein coat, in other words no more or less than a repository of genetic information, whose aim is to reproduce.  You can argue, whether a virus is living or not, since it fulfills only one criterion of life, by simply reproducing.   It does so by finding a mechanism for injecting genetic material inside of a cell,  then enlisting the infected cell's machinery to reproduce the viral, as opposed to the cell's own, genetic material.  The AIDS virus infects human lymphocytes, attaching to protein receptors, the CD4 protein which marks the cell surface, as a lymphocyte of a certain type.  These surface receptors fit perfectly with the surface of the AIDS virus.  Having attached itself to the lymphocyte cell membrane, the viral RNA is injected into the hapless lymphocyte and the lymphocyte's own cellular machinery  reproduces HIV, an irony, since our immune system, of which the lymphocyte is a part, tries to protect us from invasion of foreign organisms.

In principle, a quantum of genetic information from any organism can be placed in any other to reproduce part of itself either as genetic information or used to make one organism's own proteins in another. Thus we have not simple vertical transmission of information, as we usually think in genetics, but horizontal transmission, from one cell to another. Over the last few years different techniques have developed to reproduce strands of DNA and to make gene products in large quantity. The most efficient is to move genes into bacteria that have an extremely short generation time, in order to make huge quantities of the gene protein product.  Industry manufactures and even patents proteins for diverse purposes such as digesting oils and PCB’s.  Proteins are made courtesy of  bacterial servants include medicines such as peptide hormones, growth hormone, insulin, clot-busting proteins such as t-PA used to treat heart attacks and strokes, Interferons and a large array of immune mediator signals. Specially bred plants incorporate genes giving them resistance to disease. Cloned sheep incorporating human genes produce protein product excreted in milk. It is now technically feasible to produce large amounts both of a novel gene and its product and this so routine that doctors use it to test for genes that implicate particular infectious agents to make diagnoses.   Bacterial hosts allow workers to amplify tiny quantities of genetic material of the invading organism.  If a small genetic fingerprint is there, amplification methods will detect it and a diagnosis of infection can be made.  One method is called PCR the Polymerase Chain Reaction. This is simply a method to amplify a tiny quantity of DNA. DNA from one person is not identical with another person's DNA and each organism has its own segments of DNA that are unique to it as well, act as a fingerprint tht implicates that particular bacterium or virus in an infection, even if there is a vanishingly small amount of material to test.  Crime labs use  the very same methods.  Human genetic markers are amplified and implicate criminals with relative certainty, provided adequate care is used a suspect's genetic material can be identified in blood, or semen.  The perpetrator of a crime or the father of a child can be determined with a high degree of certainty.. This goes to show that once you discover something really basic, there will be thousands of different applications for the discovery.

Bacteria exchange genetic information frequently in nature. We have discovered this much to our amazement and dismay in examining antibiotic resistance.  Bacteria may acquire resistence to antibiotics by making proteins that break down the antibiotic. Some of these protein making genes are encoded on plasmids, separate circular pieces of DNA that can be passed between bacteria, even between species. Some bacteria resist penicillin through  use of a penicillinase enzyme that breaks the penicillin molecule down. Other bacteria in the same region, say within a given hospital or in the gut, can easily acquire the gene which produces penicillinase, thus resistance to penicillin. They can pick up this gene simply by coming to life in the same region as other dead or disintegrated bacteria and picking up as if taking up so much garbage or waste, the dead bacterium's plasmid.  Alternately, the plasmid can be trasmitted as if by infection by a bacteriophage.  Thirdly, this genetic information can pass between bacteria via conjugation. In any event, whenever you have a patient taking penicillin, bacteria that are penicillin resistant will be the only ones to survive and multiply, and you will thus be selecting for resistant bacteria. In fact this happens whenever someone decides to use an antibiotic. They are irrevokably changing a mini ecosystem, in a hospital or a gut or other environment, selecting for bugs that have acquired resistance, usually through genetic machinations, to the antibiotic. If you are one of those persons who goes to the doctor with your sinuses or urinary tract infection and for one reason or another getting various antibiotics, you are selecting each time for resistant organisms in your own body, an ecosystem filled with bacteria.  You are not resistant to antibiotics as a lot of people may misapprehend, the bacteria in your body are resistant. This data is carried for long periods of time, in bacterial genes. Another thing is that bacteria are in constant competition in your body with other commensal or symbiotic organisms such as viruses and yeast.  Kill the bacteria and yeast which are usually not affected by antibiotics, may get out of control, hence a perfusion of yeast  vaginal infections in over-treated young women who always seem to be using one antibiotic or another. Little kids constantly under treatment for presumed otitis media ear infections, are unfortunately candidates for prolonged bacterial colonization, whereas had antibiotics been used judiciously, despite the over-weaning remonstrations of their neer-do-well parents that they be treated, this situation might never have developed. Humans are constantly doing battle with tiny bacterial organisms who have the advantage of a short generations time, and rapid development and exchange of genetic material which is transferred vertically, between parents and offspring and horizontally, between organisms. On the other side is design the inventiveness our human brains that can't seem to design antibiotic molecules fast enough.

The much touted Human Genome Project aims to map all human chromosomes and to relate perhaps one hundred thousand or so loci to specific human characters and diseases. What is not commonly realized is that each gene may have numerous variants when one looks at the whole human family. An amino acid is specified by a series of three nucleotide bases, e.g. CAGF , some genetic varieties may differ from others by as little as a single base, some may be altered at more than one site, and one interesting and important type of variation that was totally unknown until recently is the replication of a triplet or trinucleotide repeat. A series of three nucleotide bases is what specifies a particular amino acid in a protein chain of amino acids. As it turns out this trinucleotide repeat is a chain of nucleotides that gets longer with each succeeding generation.  This turns out to be an important common mechanism for passing down  neurological disease such as Huntington's disease, Freidreich's and  a group of ataxias,   familial diseases similar to ALS, so-called Lou Gerig's disease and Myotonic muscular dystrophy. The more repeats the inherited the more serious the disease and the earlier it becomes manifest as a general rule as has been found to be true for Huntington's disease and Myotonic dystrophy. Many years ago clinicians observed that not only does Huntington's disease run in families as a dominant trait, it also seems to affect persons in succeeding generations at an earlier and earlier age, a phenomenon known as anticipation. With Huntington's disease, the average age of onset is about 35.  Those who have symptoms at an earlier age, have the illness more severely. Now we know why. The culpable trinucleotide repeats, get longer as they are reproduced in germ cells and passed through generations. This new genetic discovery is one that scientists never could have predicted by just knowing the basis of genetic chemistry as outlined such a short time ago by Watson and Crick.

But this advanced know how was unnecessary in the most ancient use of gene and many different mechanisms of heredity.  Undoubtedly the first domesticators of animals and plants learnt how to mix varieties of plants and animals in order to gain more yield, hardier forms, and even alter the personality of the animal product. Dogs are probably the best example, beginning a long relationship with men that started some 12,000 years ago, are pictorially represented by the ancient Egyptians who counted them among their gods.  We have segregated a single species Canis familiaris into about 400 different breeds,  used for diverse human purposes ranging from companionship and protection to hunting and smelling out bombs and narcotics.  Jacob in  the Bible became a wealthy man when while working for Laban bred speckled sheep for himself which Laban had agreed to let him keep. Ancient men of agriculture bred and domesticated all manner of  animals and plants for their own purposes, camels, oxen, horses, and cattle without the slightest notion of Mendelian laws of inheritance or modern biochemistry of DNA, certainly not a double helix molecule. Gregor Mendel with his peas outlined simple mathematical laws of genetic inheritance without having the slightest idea that we have today about the biochemistry and mechanisms of inheritance. Humans throughout history have been a part of biology, but at the same time, have always manipulated biological inheritance and that of all manner or biological organisms. Since this is part of what humans do and have always done, you may consider the science of genetics wholly natural, a product of human's superior mental capacity.  This goes to show that we have used and designed  biology for our own purposes well before the high technology of our own twentieth century.

Computers and our own genome are thus mere repositories and reproducers of information. In biology one may ask, what is the simplest unit of information transfer?  Biology, biochemistry seems to like chains, polymers, concatenations of small numbers of simple units which end up doing everything that all organisms do.  DNA is a chain of  only four nucleotide bases which encode for some twenty different amino acids which begin to form proteins, also joined in chains. Amino acid chains may join each other and also add side chains and by the end of the process a protein will be acted upon by other protein enzymes to add side moieties such as carbohydrate residues onto the protein molecule at various amino acid sites.  In the end the whole protein structure, composed of chains, side chains, and non-amino acid residues will have certain charges and bend and twist, forming a unique three dimensional stereoscopic structure. A particular protein may function in very much the same way having minor differences between species and also among various members of a single species; there may several equally effective,  legitimate sub-varieties of a single protein, in other words in a single species.  These will ultimately determine varieties or traits such as temperament or eye color, facial features and so forth so that all of us are unique though we have the same genes and chromosomes.  In other instances the replacement of a single amino acid residue or misreading of a DNA strand ("missense") may be caused by replacing a single nucleotide base, with another on a single DNA strand.

One of the most fascinating stories that is being uncovered at this time has to do with prions, which cause what are termed "slow-virus" diseases.  These include Creutzfeldt-Jakob disease, new variant Creutzfeldt Jakob disease otherwise known as "mad-cow disease", Kuru, Gerstman-Straussler disease, fatal familial insomnia all severe fatal diseases that cause dementia, psychiatric changes and generalized deterioration in neurological function. These are the so-called "slow virus" diseases, or transmissible dementias, because they are infectious diseases under the right very restricted circumstances.

These terrible, fortunately rare  disorders have been spread between humans, almost exclusively by direct transfer of nervous system tissue.  Kuru was the first of these mysterious  diseases to be extensively studied in pioneering work done by J. Carlton Gajdusek.  Gajdusek's work showed that Kuru was transmitted by cannibalistic practices of the Fore tribe in New Guinea.  They would eat human remains and women and children, the weakest members of the tribe, were left to eat the offal, remnants of brain and spinal cord. Years later they would come down with an inexorably progressive neurological disease the first would affect the cerebellum which controls balance, then the rest of the brain.  When cannibalistic practices stopped, the disease became extremely rare. Another exceedingly rare nervous system affliction is Creutzfeldt-Jakob disease which has a worldwide incidence of about 1 per million. This progressive dementing disease will often cause death within a year or so and can spread between humans and between humans and animals especially by the direct transfer of nervous system tissue, most efficiently  spread by transfer of nervous tissue as close as possible to the recipient brain.   Does this sound impossible?  It is not.  About 10 or so percent of cases are familial or inherited, for example in a kindred of Libyans,  the rest are sporadic or non-familial.  Cases have been described that are iatrogenic, that is spread by medical practice, in which nervous tissue is transferred from one human to another. Neurosurgeons in the past, used cadaver dura mater, that is brain covering in some operations. Cases have occurred with cornea transplants, using depth EEG electrodes, and among persons given growth  hormone injections for pituitary insufficiency,  which was made of chopped up cadaver pituitary glands. This was before the days of recombinant growth hormone.  But under ordinary circumstances the disease appears to be non-contagious, even between husbands and wives. The vast majority of persons with Creutzfeldt-Jakob disease fall between the age of 50 to 70, and even after being infected with brain or pituitary tissue it was estimated the disease would take many years, even decades to develop, hence the designation "slow virus" referring to an enormously long incubation period.    Many patients seemed to have the onset of terrible psychiatric disease at an older age whereas they had no history of psychiatric disease while young, an unusual scenario, only to develop later, an overall deterioration in mental function, like Alzheimer disease except progressing to severe dementia and death at a much faster rate, myoclonus, sudden jerking of limbs, and an abnormal EEG pattern which would help doctors to recognize and diagnose this rare and terrible disease. The pathology of the disease, that is if you could find a pathologist who would handle the tissue for fear of getting  the disease, consists of a "spongiform encephalopathy". Under the microscope one sees a coalescence of vacuoles or holes in brain tissue and a loss of neurons so that nervous tissue resembles a sponge.  You could take this nerve tissue and inject it into the brain of an animal especially a monkey, and eventually the hapless creature would develop the same disease.

In late 1995 two cases of Creutzfeldt-Jakob disease were noted in  British teenagers.  There have been at least 15 cases of this "New Variant" or Bovine spongiform encephalopathy in all.  The presentation is atypical in that it has much younger victims who tend to be seen first by psychiatrists and they did not have the typical EEG pattern.  These persons are now thought to have acquired the disease by eating meat from British cows. The whole picture is not completely developed yet, but it appears that the problem arose soon after British cattle came down with a Bovine form of the disease, which was likely the result of these cows being fed offal or brain and spinal cord remnants from sheep.  This was done as a nutritional supplement for cattle and comes from not wanting to waste any animal products from slaughtered sheep.  Sheep may get a spongiform encephalopathy of their own called Scrapie, named for the tendency of  afflicted sheep to scrape their backs against fences and other objects as a part of the behavioral manifestation of this brain disease.  Then by a curious combination of circumstances cow brain was used by the industry as a binder for hamburgers and sausages, (to paraphrase Upton Sinclair on the meat-packing industry, they use everything but the squeal) until the practice was stopped in 1989 due to fear of bovine or cow disease being spread, but not before the disease spread to  some humans.  Thus the passage of this terrible disease appears to have been due to direct consumption of nervous system tissue in a most unnatural way from Scrapie affected sheep, to cows thus infected with bovine spongiform encephalopathy, to humans, some unusually young persons by the standards of naturally occurring disease[12].

Some might point out that the use of offal to feed cows, which are naturally  vegetarian, and then the lacing of human food, with cow brain binders,  is more than unnatural.  It is anti-natural,  an abomination. As we learn more about genetics and master a sort of techno-biology we will come upon more and more scenarios which offend our sensibilities.  Some examples are in the field of infertility.  Hiring young women for ten or twenty thousand dollars and using  a healthy uterus  to nurture a fertilized egg (zygote) from an infertile or just a wealthy couple which can't be bothered with a natural pregnancy and delivery is one example. It may be almost the same thing as the old practice of using a poorer woman's breasts as a wet nurse.  But in this instance a  baby develops moves, gets born and to a great extent the "birth mother"  goes through the very  human process of bonding, learns to love this baby.  We have confusion and conflict,  the stuff of legal battles.  Artificial insemination though simpler and not quite as extreme, also creates problems.  It's  almost impossible to tell who are and who are not one' s relatives.  You could easily marry your half sister without even being aware of it and barring stringent checks, abuses could well occur.   Where is the guarantee that you are getting the sperm you thought you were getting?  An interesting conundrum arose on one occasion where a physician, used his own sperm to fertilize a large group of unsuspecting women thus creating a large posterity for himself.

Even more bizarre are plans by physicist-entrepreneur Richard Seed, who announced late in 1997  in light of reports of  the successful cloning of adult female sheep, Dolly  by  Edinburgh embryologist Dr. Ian Wilmut,  his intention to clone humans. In order to make this project financially feasible, Seed intended to service infertile couples.  The idea is to either remove the nucleus of an adult's cell, place it in an ovum whose own fertilized nuclear material has been removed, and to thus develop a perfect clone of an adult human, who would be an identical twin really, perhaps one generation removed, or, to remove the nucleus of the fertilized zygote of a couple, perhaps after this zygote has undergone a few cell divisions, in which case there would be a number of identical nuclei to be remove, and then to implant each of these nuclei, each with their own genetic material, into ova whose own nucleus had been taken out,  thus creating an indeterminate number of identical twins. Some problems right off the bat are that we know that the genes and chromosomes of an adult person have been altered in many ways by all of the cell divisions that have occurred up until that time. Genetic expression of most of the genome has been blocked so that the individual cell can specialize in its function.  But there is some evidence that genes age over a number of cell divisions.  Genes likely change their chemical structure so that each cell line can only divide some fixed number of times.  This process of specialization and curtailment of future cell divisions is one explanation for senescence. Undoubtedly dividing cells see an accumulation of mutations.  These processes may explain in part why Wilmut was not successful in producing a clone of Dolly until after about 200 tries. However the success in a sheep which is, after all an advanced mammal,  shows that human cloning is doable.  Of course some genetic material is not in the nucleus, but the mitochondria which means that a minor amount of genetic material would be part of the ovum used as a vessel for the development of genetic nuclear  material, so that in a small way the ovum carries at least some contribution from its egg mother. Presumably after this manipulation of heredity, a child could then have as many as three "biological" mothers, the ovum mother, female gamete mother, the birth mother, provider of uterine development, plus still a fourth mother who actually has the pleasure of taking charge of the child after birth.

Seed uses Genesis as his rationale declaring that man is made in the image of God and he is taking an important step therefore to make man One with God, men manipulating biology will be God, for this is the destiny of man. That man thinks,  means that he extends himself beyond his biological endowments and in that man is a free conscious agent, he resembles God. Men are  made in God's image.    But this is not the same as  saying that Man is God, or at least it seems to me that all of this is so much hubris.  If after all of our great scientific advancements you still need to raise antiquated metaphors from Genesis,  you might go forward a few chapters to  Tower of Babel legend,  that teaches about the folly of men thinking their works bring them close to God.  Our conundrum, which is not God's, is that we have always found, that while we may think we know so much,  the more we know, the more we know we do not know.  True knowledge only brings us closer to an appreciation of our ignorance and limitations.

As we learn more about embryology, we will more practical things that we can do.  The protein products of genes such as Lim1[13]  controls  gradients of development, for example.  Lim1  is a gene that helps create  the embryonic gradient that  determines differentiation of the longitudinal head to tail axis in an embryo.   Absent the protein product of this gene, the animal, toad, mouse, or  human,  will fail to develop a head end. Only the body will develop. Suppose a viable animal could be produced which lacks a head?  This torso could be used to harvest all kinds of products, meats for one thing, could be produced as long as one could find a way to keep a torso alive.  Industrial farmers could raise chickens and cows without heads which would alleviate concerns about husbandry or humane treatment of animals, for example overcrowding.   Protein and other organic products and blood and organs could be harvested.   The next step would be finding a way to preserve life in headless human embryos.   This could save lives of headed humans as in implantation of organs and other parts and products.  As we uncover the genetics of senescence it will inevitably become possible to keep certain human cell lines reproducing in perpetuity,  if not to keep the whole human organism alive,  as long as he or she is not destroyed by trauma or other unexpected event.  Does any of this offend your sensibilities?   The real question about any of this is on what level we are offended if at all.  Where do we draw the line, decide what, if any of this is not allowable?

 

                                                             Figure 11: Headless mice[14].

 

Such "ethical" dilemmas will be decided on the basis of subjective assessments that are essentially esthetic. That is, the headless animal/human embryo example is especially unesthetic therefore is not very likely to be accepted by the vast majority of ethicists no matter what the potential benefits.  On the other hand the perceived benefits to be derived from a technique may well counterbalance esthetic sensibilities. Should we pursue these lines or research there will be negative consequences that nobody expected or bargained for.  For example,  in forming a live cloned baby from an adult human cell,  we are very likely to see the effects of accumulated mutations,  perhaps a much increased incidence of cancer and congenital malformations and various diseases in the cloned child. Up until now our children have been formed by the cell division of zygotes formed through the fusion of haploid gametes, one from each parent.  The making of a new embryo from the genetic material of an adult diploid cell is dangerous.  Hundreds of simple cell divisions that have occurred throughout the adult life may accumulate mutations and many other alterations in genetic material. In other words it is highly probable that gametogenesis has a sort of "cleansing" effect,  nature's way of way of starting anew from scratch.  Gametogenesis, the making of sperm and egg, may have other effects that  researchers are just beginning to understand.  For example in aging, DNA accumulates change in parts of the chromosome called telomeres on the ends of chromosome structure that may affect chromosome function in subsequent divisions.  Chromosomes also form associations with various proteins, for example histones, which could carry over in a cloned situation.  This is the kind of trouble you can get into when you think you know more than you actually do, the stuff of overconfidence, scientific hubris.

Surrogate motherhood is rather confusing and appalling as well, which may explain why it is not very popular. It's almost impossible to draw up a strict set of standards or criteria to meet all of the myriad possibilities here. The feeding of sheep meat to vegetarian cows, the lacing of hamburgers with offal and giving it to unsuspecting child hamburger eaters is unesthetic, abominable, unethical. Some people might say that in doing so, people have gotten what they deserve except that the innocent inevitably suffer.

Unfortunately our approach to the ethics of new science is not at all efficacious.  We let politicians who have little or no knowledge and have still less understanding for ethics,  determine policy, mostly by imposing moratoria. What politicians respond to is what happens to be popular at the moment.  Successful politicians are trying to get re-elected.  At least involving politicians enfranchises a lot more people, brings non-research scientists who may be more disinterested and less likely to respond to immediate reward at the expense of the big picture into some form of public ethical debate.

You can't put a moratorium on thought.  To deny this is swimming against the tide. Someone perhaps clandestinely in this country or perhaps abroad where there are less constraints, will continue research. One cannot when all is said and done, stop progress.  The desire to go foreword and continue to discover is an irresistible urge.  Putting brakes exploration is a only finger in the dike. It will  only  increase the impulse for progress.

The bigger picture is that humanity cannot, in the long run be squelched or defeated.  A woman I saw complained of awakening at night, full of sweat her heart pounding, in a state of panic.  Our conversation seemed to shift almost instantly to an account of life at her new job.  She had left school after a minor head injury to work full time for a computer firm in a phone-in customer service position.  Her computer terminal keeps a running average of time spent on calls that come in. The time spent  to take care of a customer phone call is calculated to be only 5.35 minutes.  Her average was somewhere in the range of 6.55 minutes, which pulls down the record of her work group,  which competes with other work groups at the same job. As she logs on and off her terminal, her breaks are also precisely timed and compared with other workers.  Of course, some employers also keep video logs of goings-on in employee bathrooms as well as all computer activity at the employee's computer terminal even during off periods, though I had no idea if her particular employer was doing the same thing.  Your boss, who has control of activities while you are in the office, also thinks he should know what you do on your off time,  what drugs you take, whether you eat salads or steaks, smoke or do now smoke, have sex,  and so forth, because some behaviors aren't good for your health and affect productivity.  This reminded me of an HMO which installed doctors conveniently in airports and shopping malls, then videotaped them,  in order to evaluate such physician quality measures as number of smiles per patient encounter and compare these numbers with results of  patient customer satisfaction questionnaires. This information was useful, as the doctor who smiled less that average could later be nudged by management to  turn out a larger number of smiles per minute. To managers of health care plans, medical care is a business which means that patient encounters, and operations, medical care, are mere widgets, no different than boxes of cereal.  The aim is to give as little "product" possible and charge the highest prices (insurance costs),  yet still maintain customer satisfaction.  If you can make that  box look bigger,  with the aid of slick advertising and graphics, while actually  putting  a little less cereal in the box, and  the customer fails to notice,  that efficiency. Doctors who are still deluded with ideas of grandeur and think of their work as  something other than a widget, bridle at this materialistic entrepreneurial view of  healthcare.  Despite these negative influences on our work, not a few of  physicians continue to do what they have to, to do the best work for their patients. Entrepreneurs are material men who will attempt to control,  to dehumanize.  Managers who treat persons as commodities decapitate them. This is esthetically unappealing, abominable, immoral for most of us.  As long as most persons can keep rampant materialism from sickening them,  if they  know what they are and what they are about, they can work steadily to reaffirm their humanity and that of others. Revulsion can be used for positive change.  Humanity survives along with its head.

Twentieth Century history has shown that  evil can triumph over the short run. The Third Reich lasted 12 or 13 years, the Evil Empire of the Soviet Union about 72. These political ideologies, whether coming from the right or left, have in common,  the notion that  humans  are nothing more than matter, something that comes from a misinterpretation of modern science.  Hitler and Stalin have left indelible images of mass graves, huge piles of human flesh,  fitting remembrance for these abhorrent political systems. 

These and other attempts to crush the human spirit,  are short-lived in the scheme of things. No need to panic or worry.  Good eventually will triumph, though we may see over the short run, the destruction of a lot of good people. Be strong, steadfast and work to improve and repair the world. 

The mystery of Creutzfeldt-Jakob disease is far from being solved at this point, but the really  interesting question is unprecedented in the annals of medicine, that is, what kind of agent is infectious yet at the same time a genetic disease?  What possibly could be the explanation for this very unique phenomenon?

 

Figure 12:Schematic rendering of  a likely shape of prion protein which has a complex helical, linear and sheetlike 3 dimensional structure.

 

The "infectious particle" is protein, and, its seems, contains no DNA or nucleic acid, in other words is not a biological organism, but more of a poison that induces a fatal change in its hapless host.   This  is designated  a prion for proteinaceous infectious agent by Stanley Prusiner who continues to do extensive pioneering basic and important work,  winner of the Nobel Prize for medicine in 1997.    With these disorders it appears that merely specifying a precise concatenation of amino acids, by writing a certain sequence of nucleotide bases is not enough.   The process is post-translational, that is, occurs after a specific amino acid sequence for the relevant protein has been specified by thr DNA template.  The prion is a protein which has a specific three dimensional stereoscopic structure, designated PrP.  PrP in the form PrPSC    which is the disease causing form of PrP,  sidles up to the natural form of this protein present in all of us, which is designated PrPC  and causes a deformation of PrPC protein.  The protein, thus permanently deformed, will sidle up against other copies of naturally occurring PrPC causing these molecules to deform to PrPSC    as well,  thus creating a chain reaction causing accumulation of the injurious neuron-destroying PrPSC  and Creutzfeldt-Jakob and by similar mechanism the other spongiform encephalopathies. It's been shown that abnormal prion protein accumulates in specific loci within the brain, and that destruction of neurons correlates with accumulation of this abnormal protein.  This is analogous to the formation of Amyloid, whose another accumulating protein destroying neurons causing the dementia of Alzheimer disease. In fact, prion proteins are capable of polymerization and coalescence into amyloid plaques. Hence, prion research may well apply to Alzheimer disease though amyloid protein is chemically distinct from Alzheimer beta amyloid.   It is as if the brain auto-infects, the responsible agent spreading to adjacent parts of the brain in just the same way that an pus and organisms spread in any infectious process[15].   For the first time a protein is in essence a complete infectious cause or transmissible agent. This protein is partially insoluble and resistant to normal enzymes that break down proteins known as proteases, they are protease resistant, which makes them highly stable. The order of amino acids as specified by host DNA does not cause the disease except in the few instances where the disease appears to be genetically specified and to run in families.

The gene encoding  PrP is on chromosome 20 in humans. In certain instances persons who differ in their own prion protein gene by as little as one amino acid specification  sometimes by as little as a single nucleic acid, for example substitution of ATG for GTG at codon 129 for the PrP gene on chromosome 20 in both their chromosome copies will result in replacement of the amino acid Methionine with Valine and the subject will not be able to have his or her PrP deform to the pathological PrPSC and therefore will be unable to acquire Creutzfeldt-Jakob disease.  For example all of the cases of New Variant Creutzfeldt-Jakob disease were homozygous for methionine at codon 129.  The expression of other prion diseases also depends on changes in single amino acids at position 129 and other areas further up the line. A mutation at PrP codon 178 causes aspartic acid in the PrP to be replaced by asparagine.  That mutation along  with methionine specification at codon 129 are sufficient to cause a different genetic variant familial fatal insomnia.  Fatal familial insomnia is a genetic human disease that has been transmitted to other animals.  For some reason it appears to affect primarily the thalamus and first causes an alteration in sleep-wake cycles then secondarily progresses to dementia and death.

The distinction between inherited and acquired disease is blurred here. This has been one of the most controversial areas in psychology and development - which characters are acquired and which inherited. With transmissible dementias we have a situation for the first time in which even the mechanism of inheritance comes into question.  Can certain characteristics be transmitted purely through protein transfer or does inheritance need to affect DNA or RNA?  Prion like particles have been passed down in yeast cells which can inherited improperly  folded protein which corrupts other protein in the cell. This process is self-perpetuating and is inherited by other yeast cells in a process of  vertical as well as horizontal transmission without changing DNA or RNA[16].

Here we have for the first time an example of a genetic disease that is also "transmissible" in other words simultaneously infectious, albeit under very restricted circumstances.  It is most efficiently transmitted to a host who is genetically susceptible, that is one who has methionine at PrP codon 129, by direct implantation of brain tissue.  Like other infectious diseases, whether the disorder will be transmitted largely depends on the size of the inoculum.  If you give a small dose, the animal or person is likely to escape infection.  What happened to those poor young hamburger consuming British kids who acquired the new variant form of Creutzfeldt-Jakob disease is that they probably got a large dose of PrPSC  from the cow brain binders and then this protein was absorbed.  The protein seems to be absorbed largely unchanged  despite the fact that in our gut we don't absorb intact proteins, but instead digest proteins  into their component amino acids.  Part of the explanation may be that proteases used to digest proteins may be ineffective here or maybe some protein is absorbed intact for example by engulfing immune cells that line our mouth and gut.  Since this PrP resembles our own internal protein,  it may not be susceptible to attack from the immune system which only recognizes and attacks strange proteins and that is how the stuff may gain entrance to the inner sanctum, even perhaps cross the blood-brain barrier as it must in order to cause disease. In fact our immune cells may provide the portal of entry for this lethal protein into the brain.

The discovery of proteinaceous infectious particles begs the question about what is the simplest particle of infectivity, the smallest amount of data that may be transferred which is at the same time self-propagating, thus self-serving , yet causes an alteration in the host.

The concept of information transfer unifies genetics and infectious disease.  Infectious diseases such as Leprosy,  Tuberculosis, Bubonic plague, Influenza or any of the other scourges of  mankind, can be viewed in terms of  mere information transfer.  The infectious agent transfers instructions, information, into its host, and devises a way to utilize the resources of the host to reproduce.  If the parasite is very good, that is if it has been at its game for a long time and has experienced millions of infectious transfers, both parasite and host will have had time to adapt to one another and the tendency is, over many generations together for  the infection to  slowly become less virulent.  Viruses, bacteria etc.  that cause the host to die swiftly such as Ebola , will have very  little time to transfer from one victim to the next and won't be able to claim very many victims.  The infected hosts will die before they can spread the dread disease.  For the infectious agent there will always be an incentive, that is, one will reproduce much more successfully and widely if the host's reaction is slight,  non-lethal, as chronic as possible,  and if one can take advantage of the habits of the host to spread and reproduce the parasite and produce others of its own kind.  Host and parasite over time adapt to one another, the host being selected just by the mechanism of surviving the infection, and there is a lot of pressure on the infecting agent to be less virulent.  As time goes on, with host and parasite living together, they adapt sometimes more sometimes less happily to one another.  The infecting agent becomes less like disease-bearing parasite.  Infection and infectee begin to resemble symbiotes or commensals, in fact the line of demarcation between parasite and host and symbiote is blurred, as anyone with any knowledge of this subject knows.

Consider what has happened over the very few years we have been aware of HIV.  HIV is a rapidly mutating virus. The first recognized cases were rapidly fatal, partially because when you have a new disease entity only the most egregious cases are the ones at first recognized but also most probably because the virus at that time was all the more aggressively virulent. The infectious agent took full advantage of the behavior of male homosexuals and i.v. drug users that allowed  direct transfer of the virus through direct injection of body fluids into the bloodstream.  Semen had access directly to the bloodstream because of the inadequacy of anal epithelium to resist unnatural use.  Widespread use of needles was also an unnatural and unusual practice that allowed direct blood to blood contact and direct efficient  injection of large viral inoculums. Early recognized cases had fulminent disease.  Over a short space of time physicians learned how to treat AIDS and the disease evolved into a chronic form.  The virus itself, may well have become less rapidly fatal.  Don't forget that rapidly fatal fulminent infections tend to be selected against in favor of more chronic milder forms that stick around longer to allow the host to spread the organism to others.   At risk groups hosts, i.v. drug users and male homosexuals may have evolved as well in a sort of survival of the fittest, those who were more susceptible dying early of the disease.  But the really interesting thing is how technology, man's own design, has changed the character HIV disease and this is almost unprecedented.  Physicians have devised means of treating unusual infections that AIDS patients acquire, but also combinations of drugs that include newer protease inhibitors.  Now AIDS has been transformed from a fulminent to a  very chronic disease allowing infectious hosts to survive almost to a normal life span.  Now the host will be infectious for a long time. The only saving grace is that viral loads and titers may be very low in HIV carriers decreasing  the likelihood of transmission, or infectivity.

The virus has taken full advantage of certain human behavioral practices. Despite what the media say and experts have warned us about,  HIV remains rare in the U.S. and truly exceptional,  among non drug abusers who practice heterosexual non-promiscuous mostly monogamous sex. By contrast, in North Africa even in the absence of advanced medical care which may well serve merely to extend interminably the period of infectivity of the disease, HIV affects a good proportion of total population of men, women and children.  This is due to extreme promiscuity in men. Prostitution particularly has been implicated as well as other forms of unconventional (non-vaginal)  sexual practices which are more likely to occur with a prostitute as opposed to a regular sexual partner.

Humans have had a long relationship with viruses of the Herpes family.  We know this because these viruses survive within our tissues especially nervous tissue over a long life span.  Studies have shown that the vast majority of Americans harbor different types of Herpes viruses especially Herpes simplex, Herpes zoster the cause of chickenpox and shingles, and the Epstein-Barr virus that causes mononucleosis.  The hallmarks of a mutually long relationship between virus and host are there.  The vast majority of Americans are infected with these viruses while young.  Most do not recall their primary exposure, which means that infection caused so few symptoms, it was not even noticed.  That happens in the situation of all three of the above viruses.  80-95% of adult American harbor antibodies against the above Herpes viruses, which means we've been exposed and harbor viruses as well, but do not even recall having symptomatic disease.  Most of us are immune to mononucleosis which is caused by the Epstein-Barr virus but very few of us recall having it. Virus and host have had a long time to adapt to one another. Since antibody can be detected over many decades in most of us, Herpes takes full advantage of our own machinery to reproduce. Perhaps it even gives us something in return for the bargain, that we are unaware of.  This is done assymptomatically in most cases and only rarely will large amounts of the virus be reproduced and a person in the case of shingles will infect himself with his own internal Herpes zoster virus,  or if extremely  sick old or frail where immune surveillance is down,  he may acquire virus from others.   It can be said that Herpes family viruses are almost a part of us, less a parasite or disease, than a commensal. This is speculation but it is possible that humans have had such close relationships with parasites in our distant past, that their genetic instructions do indeed become part of our own genetic endowment, in other words that we today are infected with even older viruses whose infection is completely silent or undetectable, that our relation is so close that they've become a part of us, a neutrino of the parasite world.

      A neutrino is a subatomic particle having almost no mass and no charge.  Neutrinos are stealth particles. You cannot weigh them because they are so light, nor do they can they be detected by any device that measures charge, since they lack electrical charge. Yet some astronomers postulate that neutrinos are so numerous, they may constitute so-called "dark matter" in the universe that in aggregate may be the great bulk of mass or substance in the universe.  It is possible the great bulk of our genome is parasitic, yet undetectable as such due to the fact that these old parasites no longer cause disease. Disease is the major way we have of detecting infection.  We may have been infected by numerous organisms that have since become a permanent part of the human genome, stealth particles that escape detection. Some of these have conferred certain advantages such as mitochondria that introduced new repertoire of energy utilization to early species and whose genetic specifications were incorporated permanently into the cell. It is theoretically possible that a good deal of genetic material now part of the machinery of the cell, actually originated from infection by other organisms rather than purely through adaptation and natural selection.

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In the case of genetics, just as the study of space and information and computer theory, the more we discover, the more we learn what we do not know.  We have abundant knowledge about the molecular biology of inheritance, but over the past 50 years or so since Watson and Crick's elucidation of the basic chemical machinery of inheritance more and more varying pathways of information transfer have been elucidated that need to be explored further. To think that because scientists can use bacteria to make genes or protein products or clone sheep from adult cells, that we are all powerful or have done anything but merely scratch the surface of genetic knowledge is pure hubris. The last few paragraphs give a limited view of how incomplete our knowledge base is.   Distinguishing lines are completely blurred in  the transfer of genetic information.  What is the fundamental unit of  matter used in the transfer of genetic information, DNA, RNA, protein in some instances?  What is the basic unit of information transfer? Is it a single gene alone that seeks to propagate itself or a larger aggregate genetic product, a bunch of genes that have bet their futures together as members of a group that we call an organism? Prions, genes, chromosomes, plasmids, mitochondria, chloroplasts, nuclei, bacteria, protozoa have all been agents of transfer.  What is the distinction if any between an infecting organism, a parasite and its host?  Given the abundance of strategies for propagation after one's own kind, what is the distinction between an idea, a particle or datum and the material biological vessels used to promote and reproduce that idea?  The distinction is analogous to matter and energy an idea freely mobile between a biological material state and a particle of information.  Here we see in miniature a reaffirmation of perhaps the greatest discovery of the Twentieth Century the equivalence of matter and energy.

As scientists acquire more information our vision, if anything, blurs. Typical distinctions are indistinct.  The fundamental relation between matter and ideas appears to be that matter serves as a temporary storage device or vessel for ideas but that as time goes on and we begin to master the process, matter and ideas will become freely interconvertible.   For the moment, matter and ideas are indistinct. Both turn out to be an apparition or ghost, which as we try to grasp it, disintegrates in our hands. The more we learn the more we find out how much we do not know.  Perhaps this is the fundamental secret of the universe that it is here for our pleasure, always just beguiling enough not to bore us, just large enough to be beyond our grasp, just barely in the range of wonder.  Matter at best, and here we are talking about matter in the form of biological reality, is a temporary vessel for the propagation of ideas. At least at this early stage we have come to that realization.   Perhaps the computer, our latest gadget for storage, manipulating and transmitting  information may  one day supersede the human brain.  An alternate strategy would be to change properties of the brain itself to overcome its limitations. Humans may fundamentally alter our biology to increase mental  and other capacities that are today totally out of our reach. To perfect our tools or to change our basic selves, or  some combinations of the two, these are our options as we separate ourselves from our own limited biologically given capabilities and step beyond biology.  We have this choice because at base we are composed of two sources of information, the biological or genetic and the computational or cerebral.  For "lower" organisms this is expressed almost entirely in biological terms, while for us, this data is mostly computationally specified in terms of electrostatic charges perhaps in our brain, but also with dependence on extra-cerebral information repositories.

 

 

Figure 13: The human condition.  The total organism is specified by the genetic complement plus informational content of the brain.

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The idea here is if one died and were to come back, on what basis would we reconstruct the same individual, one who would not only exude the same response in a similar situation. But would sense and cognate, process i information in the same way.  This newly reformulated person would be identical with the decedent in every respect and would in fact be that person.  The two sources of information necessary for this specification are represented in the figure above.

Here is the cool position we are in:  If we want, we have the technology to alter fundamentally our own form and anatomy. The danger is that we will change ourselves so much we will no longer be able to  keep track of who we are. Suppose someone creates a new human with a bigger head and shorter arms, another proprietor makes persons with longer legs, bigger lung capacities and so on. After a while we'd accumulate so many varieties of the human form we'd lose track of what a human is. We would do this to compete with ourselves, to run faster, live longer, remember more, think better, experience life with greater intensity, etc.  The other strategy is to keep form essentially the same, which would simplify accountability, keeping track of who we are (though I think we will hardly be able to resist making some "improvements" or at least eliminating diseases and disabilities) and utilize tools or our own invention - the best example is computers and Silicon devices, but cranes and trucks buildings and all civilized accouterments fall into the same category - and to work ever more closely with these machines, and still expand our capacities. The point is this goes to prove, that there is much more to us than is specified in biology. Even at this primitive stage of our existence, we are no longer confined by our biological endowments. It proves that biology does not limit us, our material nature does not even define us at all. There is far more to the human condition than is specified by biology.  After we reach a certain point, perhaps getting rid of some imperfections and accidents,  eliminating disability suffering and disease, the stuff that is done by medicine,  and providing for basic needs food, comfort, jettisoning limitations, the human spirit will soar,  showing once and for all, in case some of us remain unconvinced, that there is more to humankind than material existence.

This is a summary of who we are.  At very bottom we are biological creatures of course. Our needs are basic to ensure survival. They are food, shelter, sustenance, freedom from disabling disease.  If we are successful we reproduce our own kind, not an exact replica of ourselves but creatures that claim a resemblance to us, sons and daughters. In order to accomplish this most successfully,  we use the tools of a family and more extended social structure. We seek to avoid death as much as possible. Death occurs anyway because without it, there could only be a vastly reduced number of experiments that we perceive as individuals of a kind, and without extensive experimentation with different individuals, there can be no adaptation, hence those of this certain kind would lose out ultimately in the game of fitness which involves adaptation to new environmental vicissitudes. Thus the paradox that organisms that will be successful need to die but individuals of a species as a general rule try with might and main to preserve their own life.

Biology is only the beginning.  Biology is matter but without it we have nothing.  Our anatomical and chemical form up until now, was the stable base from which persons were recognized and defined, and still are to some extent, considering our current state of knowledge.  Our cells and our aggregate organism, is the repository, the growth capsule, the spore or protector of data, an abstract idea that is us.  All at once this organism is us, but it has lately become only a launching platform which is necessary to allow human development and life. But at some point we are becoming bursting forth from the egg the biocapsule which has up until now formed and defined humankind.

Humans specifically, perhaps alone among all organisms, step beyond this basic biology.  In this text we have come to consider the biological machinations as only a beginning, necessary but not sufficient for the nurturing of an idea. Humans have learnt through their history to step beyond this biology yet have heretofore but perhaps not forever, will use biological capacities as a springboard to greater accomplishment.

Long ago humans learned to take one step beyond the biological imperative, that is to want more than mere subsistence, wonder at the world.  Mundane day to day existence and survival were one thing, but very early in human history there were those who insisted on something more than mere survival. These were the artists of Lascaux cave, the builders of homes and relationships and commitments.  Some persons seemed to decide that there was something more than mundane day to day subsistence, the product of the hunt and material gain, that while at the same time fulfilling basic material needs, that they needed to take care of an inner sprit newly discovered. Surely our ancient ancestors dreamed as we do, about conquering death, the preservation or return of their own consciousness rather than its final end.

It is in this effort to step beyond the bounds of biology, dissatisfaction with mere survival but turning outward from ourselves, and inward too exploring uncharted regions in and out of ourselves, that was the start of self-expression, art. It began with an incautious curiosity and dissatisfaction with the status quo and meant taking risk, sometimes the risk of death, and a step away from the biological imperative.  In the long run this tendency was instrumental in the survival of humankind even if it meant, as it inevitably did, short-term danger.

When the work of the day was done, when basic material survival was ensured, the artists of Lascaux cave risked life and stepped into another world of artistic production. What other explanation is there for their work except dissatisfaction with the daily routine and simple survival?  Indeed what better explanation for the creation of a work of art or a symphony which has no obvious survival value a dissatisfaction with the ordinary and a need to escape the practical. We stand on two legs one in the real world but an second is firmly planted in an alter world of ideas and spirit.  Both are necessary to support our basic human structure. In doing so we have taken the second step in our liberation from our biological nature, which is, after all, only part of us. Each new advance is a bootstrap that then accelerates further development.  We have mastered our mechanical and physical limitations. Suddenly we are able to travel,  store information, and transform and manipulate data as never before. Through it all comes all technology, music, arts, architecture, science and all intellectual adventures of mankind.

 

But there is yet a third phase that is in fact more transformative and it is almost a kind of Messianic era that we are entering today. It is the transformation of ourselves from our basic biological endowment.  As we have seen computational devices allow us to store and manipulate data, and to sense as never before. These devices whether implanted or not, don't just enhance our cognitive capacity, but radically change who we are. Mind extenders increase our mental potential. And with this added potential we soon will develop new genetic techniques to change even that basic biological form. We will one day perhaps not recognize ourselves, our appearance will be materially altered by the machinations of an expanded mind.

Human life is a sheet of many dimensions.  Every  person who was is or will be can be found within as given set of space-time coordinates.   Though Einstein is dead now it will always be possible to return to his own coordinates, at Princeton in 1942 and to find him, if we ever develop the technology to take advantage of this. There exists a giant address book that controls this information. Every life is  suspended in this limited Cartesian system. Every person’s life is a  gossamer sheet extending as far as their eye can see, as far as their perceptual gaze, far out as their efferent grasp.  To understand a language or apprehend music,  play piano or design a building, then and there can be found in all these limiting extents among separate dimensions.  Certain folks extend quite far in one or another of these dimensions in the area of cognitive function and consciousness and well as in space time. Others extend farther out on other planes, long life perhaps. In dying one should not worry for he is always there with some potentiality he ever had. If so the major task in life would be extending these potentialities, our multi-dimensional sphere. Each of us leaves something behind after we are gone, a child, our work, something written or created, that serves as a handle of limited extent from which another persons who carries on, can retrieve a memory engram analogous to the retrieval of memory inside the brain only here from some enormous repository of information in space and time.  It should theoretically be possible at any point to go back to the appropriate coordinates that specify a life, and retrieve that particular existence again.

The cosmos is a giant fabric of n dimensions holding all that was, is and will be. Humans, within their limited capacity, strive to sense the contents of this fabric, like the way a phonograph needle, tape or computer disc magnetic head, or CD laser sensor plays contents over a limited extent of these storage devices, just as ribosomes read the sequence of nucleic acids on RNA.  All of these situations have in common a limited capacity to experience at any time only the tiniest portion of the total contents of writings on the storage device. Religionists may call this cosmic fabric the Mind of God, but if there is a God, this is only the memory of the Mind of God, all the more impenetrable, unfathomable is the entire neural structure.

Every life is then an engram laid out in some gigantic neural structure. Each person hammers out for him or herself a structure of limited scope in perception, thought and action, a neural structure within another neural structure, the Mind of God.  At any moment, this engram which is a life, may theoretically be retrieved, extracted by its memory handle.  Each of us exists and ever will exist in the great eternal mental structure of our cosmos.

Given that we cannot be defined by a limiting form which give birth to us, our spirit, then is ever harder to grasp precisely who we actually are, our full essence. So much more is there to us than is delineated by material understandings. We have only to realize that we are far more than a machine, a mechanical contrivance. What we strive for, more than anything else, is to get our bearings in the midst of an exploding maelstrom of a cosmos.  Where we live, knowledge built upon other knowledge expands exponentially, we have to be in a state of perpetual confusion, a divine diversion that commands our attention and ever holds interest if only because complete mastery and understanding always will be just beyond our grasp.

If this is true then it must be the idea rather than the receptacle device storing the idea that is the important element.  The preservation of a living container, occupies us most, but is comparatively unimportant.  A physical body is as a plastic compact disc is very nearly worthless without its proprietary contents. In just the same way the mind exists in an organism, a mere receptacle for information. Uncovering biological, chemical, electrical mechanisms gives us many tools for understanding ourselves, but describes life only at its most superficial level.

Mind and brain complementary understandings analogous to wave and particle descriptions in physics. Mind and brain, energy and  matter, ideas and physiology are equivalent and interconvertible aspects of the same phenomena.  Understand one aspect and your understanding is incomplete.  If physics were only seen from the standpoint of particle interactions with no input from wave mechanics,  knowledge would be one sided, incomplete.  In just the same way the human condition is only incompletely apprehended through understandings of physical brain sciences.  Hence we have complementarity. We may hope perhaps that one day scientists will unify complementary conceptions into a single unified theory, but this is not likely to happen soon and is likely to occur only after we alter some current fundamental misunderstanding.

This is the world of the future. As this book was obsessed with viewing the mind through the window of the brain, matter makes mind, matter makes ideas.  If there is one lesson as we move into the twenty-first century,  it is that the  idea is the maker of matter.  We are right now transitioning from the notion that matter makes the man to the idea as the essential element.  We see this on a practical level as we experience even in our economy that persons who know how to manipulate things, are relegated to repetitive tasks are losing income relative to those who can manipulate symbols.   Persons who manipulate symbols and words achieve success. Ideas have it  over matter.   The Mind has control over the brain.  As time passes, in our economy,  we are exiting the world of matter and enter to one of pure thought.  We are breaking out the egg which bore us out of our  biocapsule.  As our efforts become more and more exuberant and adventurous,  biology will be ever more surrounded, conquered, outflanked.

And our method for increasing adaptation to our world has changed strikingly in recent history.  Formerly knowledge was revealed as from on high by a seer or a prophet.  At present we depend on the scientific method to tease the facts out slowly, patiently and methodically.  Science, discovery,  not prophesy has provided the revelations for our age. Knowledge is won by dint of  hard work, fastidious methodology.  The work, sweat, sacrifice of discovery, making of man in our own image. Previously  there seemed to be no purpose to the universe. That is the horse race. At present those who believe in purpose, in creation of an ordered cosmos at one instant are winning. How large is the cosmos? Large enough to keep our interest.

Here is a new optimism.  Gone is despair and panic that results from wholly material man with fixed chemical composition, that there is little or nothing more to our essence than mechanistic relationships, the  profoundly distressing and depressing point of view held by many of our contemporaries. The wholly material person derives from a misinterpretation of modern scientific data.   We have good reason to hope, now with a proof that what we are will never be confined by material and machine, that we have crossed into the threshold of a brave new Promethian world- beyond biology.

Many of our most prominent thinkers, brilliant scientists, have sought to reduce us to our material constituents.   They have used as their argument, advances in technology that have enabled us to study and understand more than we have ever grasped before.  As I hope I have shown, they are defeated by their own discoveries.  Great scientists such as E.O. Wilson, Francis Crick, among others, seek only to subsume all thought under an umbrella of biological causation. The argument goes something like this: The greatest inventions of the human mind, buildings, works of art, ethics, have come about merely as a product of a biological determinants, mere parts of a larger biological imperative.

Music?  Well that came to be because of the need for the human family or tribe to form an emotional bond to help in the aim for adaptive societal cohesion. It’s so easy to see how initiation, marriage, war ceremonies and  other types of nodal tribal events were helped along by rhythmic tribal dances and mesmerizing repetitive patterns in sound which enlisted limbic or emotional parts of the human brain.   Primitive art? The same mechanism. Primitive art illustrates techniques of the hunt, and inculcates respect for the hunted animal, which sacrifices its life for the survival of the tribal group.  This served as an efficient means to hand down basic concepts from one generation to another.  The groups that were more successful in doing so are the ones that survived, by virtue of their cohesion.  Writing? Writing, indeed defines the boundaries of history and pre-history, and has been with us only for a few thousand years.  This is biological too.  It’s always more adaptive to be able to record and pass down specific information.  

Ethical principles derive from a biological imperative.  Wilson and others have shown   how the almost universal incest prohibitions make eminent sense from the biological perspective.  Incest is maladaptive in that it decreases genetic variation and increases many fold the chances of having genetically defective offspring or even offspring with fatal genetic flaws. Just as incest taboos have arisen, and make excellent biological sense, so must all ethical principles be essentially from a biological adaptation. Good ethics increases fitness, adds to the probability of survival.  No need to invoke concepts of a supernatural deity handing down laws that make eminent biological sense. 

Great scientists more than the average mortal, are aware when they are reason on the basis of example.   They know, or they should know that their examples will not suffice to describe a whole class of phenomena, particularly in the category of ethics.  Reason by example is inductive as opposed to deductive logic.  Induction presupposes that once you have uncovered  a pattern in a few examples, the rest of  the phenomena in the same category work by a similar mechanism.  Hopefully you have come upon a pattern, but it just as possible that you have veered in the wrong direction. Reason by pattern of course, differs from deductive logic of stepwise implications.

Scientists. of all people should insist on filling in the blanks. A few examples may fail to establish a definite consistent pattern. Incest is an almost but not quite universally taboo. In Hawaii and ancient Egypt sibling marriages were encouraged typically in royal lineages.  And a biological basis for ethical taboos is on even weaker ground in consideration of marriage law, which varies considerably from culture to culture. Some societies tolerate polygyny, even a few polyandry, some encourage levirate marriage in which it is incumbent upon a brother of a deceased man to marry his widow. Is it more adaptive to encourage polygyny in which few successful males sire a large percentage of offspring, or may this strategy only create discontent among the mass of male subjects, and end up being maladaptive in the sense that there will be a less variation with majority of offspring coming from few male progenitorsy?  The genetic effects of monogamy vs. polygyny are roughly calculable. The most biologically advantageous system, one would expect, would apply across all cultures, but this is not what we see.  One would expect the most potent arguments to be in the highly biological arena of sexual selection.  Yet, the argument is weak even in this limited purview.

Other areas of ethics are far more unfathomable from a biological adaptation perspective. Laws about just treatment of helpless widows and children, all matters pertaining to altruism, religious rituals including sacrifice and hosts of other customs, the support and toleration of weak and unproductive members of society and those laws accepted as part of the social contract, ancient rules of war, the Geneva Convention are profoundly unbiological in that they are impossible to explain on an evolutionary basis.  These laws may be accepted as “fair price” to pay for the object of societal cohesion but here we get into the very sticky areas of group vs individual selection, not accepted by all evolutionary biologists.

The unit of selection from the biological perspective is the individual.  In biology the name of the game is to pass on your own genes.  The organism is merely vehicle for the transmission of genes.  When an animal performs an altruistic act, for example, warning other members of his group about the approach of a predator thus calling attention to himself or sacrificing his life for someone else’s benefit as an soldier ant might do during an attack, or even better, standing up to a vicious animal in order to allow others to escape as is found even among primates, he is performing an act inimical to the passing on of his own genetic traits.  Such an act will not be selected for except for a couple of considerations.  If his altruism signifies that an equally altruistic act will be performed by others in the altruist’s  behalf, then there is a reciprocal relationship. 

Alternatively, and this is by far the most frequent explanation, he may pass on his own genes providing other members of his group whom he has saved are very closely related, meaning that they share many of the same genes.  One example is so-called  kin selection.  The ordinary animal shares an average of  half his genes with first degree relatives, siblings, children and parents.  If he sacrifices his life so that two children survive, he will more than break even, particularly if he has finished making offspring.  The name of the game from the evolutionist’s viewpoint is to pass on one’s own genes. A gene for altruism will survive in a population if it helps the carrier pass on his genes. Otherwise the altruism gene is detrimental. Take a group of social insects where thousands of individuals share the same genotype.  Nothing at all is lost with the sacrifice of an individual.  Preordained sterility as often is possible as is known with workers of a hive. This is the calculus of biological altruism, which is not, as can plainly be seen, altruism at all.  The natural altruistic act is performed for the benefit of the individual performing it. Otherwise most biologists dismiss the notion that the individual gains because of preservation of members of his group, so-called group selection.  Evolution progresses for the benefit of the individual, not the group. The individual is the unit of selection.

In humans, and only among humans, things may well be fundamentally different.  Throughout history large societies even cities and states have competed directly with each other.  The consequences of losing a competition are often disastrous, particularly in war. Loss of a head to head combat most frequently ends in annihilation of the losing side and that often includes an entire city-state or nationality.  At the very least men of the conquering tribe will inseminate women if  they allow women to stay alive as an entire culture becomes subsumed in another. Certainly in human populations, though individual selection likely still predominates,  group selection is important as well.

Thus group cohesion and all ethical principles that would promote the survival of the group hold little water when it comes to pure biological argumentation, while for humans things may be different. This being the case it is far more parsimonious from the scientific perspective to observe that basic ethics, that is the most primitive taboos, perhaps derive originally from a biological imperative, but from there on, ethics acquires a life of its own. When congress is deciding to change a law,  primary considerations are whether the change is consistent with previous derived laws and principles or if the newly considered variation is not with these principles, not whether the change will be adaptive from the biological perspective.  Not a few biologists might suggest that the primary consideration for ethics and laws ought to involve adaptive considerations, but all would agree that this would mean the primary thought in this instance would be for the fitness of the individual and this in turn would mean preserving the reproductive potential of the most fit among us, which is not what the operation of modern societies is about.

In fact, many of our laws invoke quite the opposite, protection of the weak and minorities among us. Laws in a modern society are (ideally) passed and enforced for the greatest good. One of the pressing issues in our own day, as in the past, is whether to accept immigrants and in what numbers and under which circumstances to accept them. Immigrants as a rule flee political and economic disadvantage. These underprivileged persons come to us starving, filthy, diseased, and undereducated.  At first glance they are highly unappealing, that is until one realizes mostly by virtue of empirical (historical) evidence that immigration is the greatest engine of American diversity, most probably the main cause for our international hegemony. (Recall how the raw material of biological adaptation is also diversity.)  Immigrants are no random sample of foreign populace. They among their compatriots are the ones who risked everything to, of their own accord, flee the status quo or persecution and economic disadvantage.  Displaced persons are proven to be more productive than a native populace typically within one or two generations.  Thus initial impressions are deceptive. More than that, the members of human societies are genetically diverse.  Yet they compete, today more than ever, directly with each other, not only militarily in the past, but to a much greater extent in a global economy. 

The difference between humans and animals is of course, the brain, which allows the maintenance of complex societies with their own geography, language, customs, ways of making a living, and defense.  Human societies are cemented together by various cohesive elements, but the important point is how the fortunes of the individual are linked with every group member. And members of a societal group need not be as closely related genetically, need not be kin at all, in order to share a common lot.  It is because of the brain that the units of inheritance are not only genes, but also common  patterns culture, societal rules.  All persons are a part of a vast societal framework, a collective consciousness. This information is reproduced and passed as surely as are genetic traits, from generation to generation.

Groups that espouse cohesiveness, productivity, freedom, respect for individual differences, a host of non-biologically based values, increase their own fitness.  Groups that espouse a specific ethic or reason for being have the greatest chance for success.  Those groups whose watchword is the fitness of the individual alone, selfishness, the immediate gratification of personal need, fall into the rubbish heap of history.  Modern events prove this more actively than ever.   Examples abound from Rwanda to Kossovo. What is right is not necessarily in keeping with a biological imperative. Ethics as in all other areas of human endeavor, acquires a life of its own.

Music too and all other art forms no doubt, originated as biological adaptation.  But biology cannot explain a Beethoven symphony. The symphony was born in the limbic system or emotional mind of Beethoven or perhaps in a motivational area of his brain, the anterior cingulate.  From there his cortex would have been instrumental in design of the ultimate structure of the symphony.  But as I hope we have seen over again in preceding chapters, these brain structures have served as a platform or basis for invention.  Without any one of these structures and many other brain constituents too, Beethoven would never have been able to write his symphony.  But this says nothing about the final form of the work or its meaning, which comes not only from the brain, but something intangible in the man who wrote the music. That is to say without his brain Beethoven could not have written his music.  The brain of Beethoven thus exerts somehow a permissive effect on his work, but does not determine the final form, which comes from something defying anatomical description deep within his being. That, in fact, is the story behind all invention.  To state that the brain is necessary is a truth with a small t.  In fact so are his kidneys, liver and so forth necessary, as but for them he would not have been alive to accomplish his work. To maintain that to know this brain anatomy and physiology in toto, would tell us how he did his work and all of the meaning behind it, is at this point in time a leap of faith.

The brain is and all its products are subject to the same rules as govern any complex mechanical contrivance. A good metaphor is the power plant of your car. At best this performance machine allows you to accelerate from 0 to 60 mph in a few seconds. Take out the battery, and the thing won’t start. You conclude the battery starts the car.  More precisely the battery is necessary to start the car, not that other parts don’t participate in this effort and are not also necessary, least of which is the starter.  Certain defects are fatal. If the oil pressure is down for a long enough period of time the engine will seize turning your car into lifeless scrap.  In other situations the engine will continue to function, though at an impaired way for example with defects in the valves or carburetor. The car won’t run smoothly and will lose power in passing and on hills. Maybe it will burn oil.  But the thing will limp along and carry you for a long while. So it is for the brain which may have fatal or not so serious deficiencies. Punch a hole in the brain, create a lesion as by a stroke, and the organism, as a general rule continues to function. An accumulation of defects or a single serious event makes brain function incompatible with life. 

Lesion the cingulate gyrus, and a composer will be unable to produce a meaningful work.  The same holds for the left hemisphere.  Both of these structures are necessary for the creative work of our composer. According to this line of reasoning, the logic of the lesion experiment,  the intact normal functions in a manner indistinguishable from the lesioned  animal.  Both the cingulate and left hemisphere are necessary for musical composition.  But necessity does not equal sufficiency. No one has proved the brain alone as flesh and blood is sufficient cause for high human creativity.  Music, like ethics, may start in biology, then acquires a life of its own, separate from biological contingency. 

In music, art, writing, architecture, ethics the first furtive steps of the initial journey probably did occur because of a biological need, but all of these endeavors and more, later acquired a fire of their own. Primitive music enhanced tribal ritual and cohesion. It’s easy to picture it as an adaptation, in that tribes without music may have had more difficulty surviving than tribes that had it.  Once having gotten started music developed as a thing in itself. That means that modern music plays many roles far removed from its original biologically adaptive function, which should be obvious even to a biologist. What are we to make of the development of musical notation and invention that culminates in Bach and Beethoven?  Like the persons that produce them they were born of biology, but the entire future and form and not biologically determined. Biology set the process in motion, but kindled fires all about that are out of its control.  How do we incorporate chamber music or great stages such as Lincoln Center into a biological scheme?  Obviously modern music has acquired a reason for its own development as a thing in and of itself, a separate life. This separate life is not explained or even delimited by a biological imperative.

All branches of learning and accomplishment have gone in their own separate directions, branching from their biological origins.  They’ve evolved into separate flames kindled by that original biological fire.  All of these areas of endeavor began out of biological need, but at some point, in some cases very recently in our history, we have managed to break free of biological causation and limitation. The reason for modern advancements has little or nothing to do with original biological causation. All fields of intellectual endeavor worked by specialists who transmit and advance each individual field. The reasons for pursuing these separate endeavors  now has little to do with survival and fecundity or reproduction, but more with individual self expression, societal advancement or enrichment, improving the quality of life. In essence by applying such knowledge we are reaching for a goal that transcends simple survival and reproduction. And in the end, as we have seen, we change ourselves.

What then is the role of the brain?  The brain is a platform, making possible high human accomplishment.  With the aid of a system of human invention and technology which bootstraps upon itself. The brain is merely a launch pad.  The rocket attains escape velocity freeing itself from the limits of gravity.  And as everyone knows, it is not the launch pad that determines the rocket’s trajectory.

From the scientific perspective all fields of human endeavor will be found to have a physiological or anatomical, that is, a mechanistic cause.  That cause resides in the brain. That the scientific method will reveal everything by brute force, that is the steady application of scientific method, over a long enough period of time, is an article of faith as much as is found in any religion.

From whence springs this freedom this creativity that we find in the intact functioning human?   If not for the machinations or the white and gray matter of the brain, from where does this derive?  With self-accusatory tongue in cheek all I can say is this comes from a certain Je ne sais quoi. No matter how wise we think ourselves to be, there is still a basic elemental constituent uncounted by any mechanistic theory. This is what some might call a non–material soul the origin of all motivation, of all thought feeling and action.  Using current tools and limited by mechanical as opposed to spiritual considerations, I see little hope of ever localizing initiative in the substance of the intact functioning brain. The brain is a single platform housing only a small quantum of memory and thought. As human expertise advances each individual is less and less limited by the capacity of a single brain. As has been made abundantly clear by this time, the limit of awareness ranges far outside the confines of any single human head.  

 

But what of perhaps some kind of communal instrument of thought?  Indeed one expert may reach into the brain of another to alter or improve his function. The expert functions with knowledge shared between myriad practitioners of the art. A universal expertise, a communal knowledge transcends us all. The farther we wander in the journey of human understanding, the more we appreciate that now, more than ever how we have evolved into a form emancipated from the limits of our own body and brain.  Humankind is as Prometheus unbound – unbound from our own biological beginnings.

 

Each of us, every human born, can be seen as a small node in giant pattern of human societal evolution and technological development, artistic expression. Each of us is born, takes his or her place, continues suspended in those coordinates in life and then in death.  Awareness is a communal enterprise, each individual person no more than a node,  a part of something larger.  

 

Hm-m,” he said. “Lookie, Ma. I been all day an’all night hidin’ alone. Guess who I been thinkin’ about? Casy! He talked a lot. Use’ta bother me. Bot now I been thinkin’ what he said, an’ I can remember – all of it. Says one time he went out in the wilderness to find his own soul, an’ he foun’ he didn’ have no soul that was his’n. Says he foun’ he jus’ got a little piece of a great big soul.  Says a wilderness ain’t no good, ‘cause his little piece of a soul wasn’t no good’ less it was with the rest, an’ was whole.  Funny how I remember.  Didn’ think I was even listenin’. But I know now a fella ain’t no good alone.” –

John Steinbeck The Grapes of Wrath   (Chapter 28)

 

 A life lived is an indelible record in a huge space-time array that we call everything or simply, the cosmos.  At any time, before or after the actual consummation of that life, it should theoretically be possible to extract that memory module, to replay a single life. The process is similar to a phonograph needle or laser lighting on a record or CD to replay its contents.  As discussed, these “universal” memory engrams most likely are recorded and recalled holographically as are memories within the brain. Everything living and dead leaves a trail of its existence in space-time. These trails or engrams are ordinarily discoverable by use of the scientific method. They may be sensed by other means, through affect or subtly as through emotion, or sensed through intrinsic memory mechanisms, much as the emotion-charged memory of a loved person springs into our mind at times or subtly influences our behavior.

 

The difference between the atheist and religionist is teleological. The atheist and religionist would agree that events and lives leave a record or trail of discovery.   The atheist sees these lives and events occurring without method or purpose. To the atheist the cosmos is a mechanical device.  The religionist looks out into space and sees an Eternal Mind, with all of its constituents not the least of which is motivation, strategy and purpose.  The religionist might admit that the cosmos seems to work mechanically,  but it is a mechanical contrivance put together or set in motion by a higher being.  Each person’s mind, is a component of universal knowledge which in turn has a place in larger human history of life and understanding, a communal knowledge passed horizontally and vertically from person to person, community to community.  The bigger picture the human essay, part of the Eternal Mind conveniently represented here not as some mechanical recording device, but symbolized by the entire human brain, signifying that these memories at the human, communal, historical, universal levels are multimodal.  They require all of our pitifully limited human faculties, auditory, visual, and a lot more to appreciate their fullest splendor.

Figure 14: A human mind remembered in the in the mind of the Eternal (not to scale).

 
 


 

 


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The rendering of the brain here of the Eternal, the depiction of the cosmic mind in the form of the human brain doesn’t imply that the Eternal’s mental machinery is as limited as the paltry contents of a single human skull. Instead it is meant to signify a certain completeness and purposefulness of being, a wholeness of thought, feeling, perception, cognition, volition that are composite functions of the brain with each of its lobes, brainstem, cerebellum and all of its other parts. The brain isn’t everything, just a symbol.  In our feeble attempt to grasp something infinitely larger than ourselves it helps to anthropomorphize it, at least as a first step in understanding.

 

In closing we should all be mindful that each and every one of us is a part of a much larger plan, that we are suspended for all eternity in this plan. It helps to keep this perspective even as we are harassed by the narrow limitations of our mundane daily existence at work and at home. This realization is the very meaning of freedom. In it we are suddenly transformed,  unbound from grind of everyday life. We escape our own worldly concerns,  as we jump out of our own skins,  seeing how we transcend our own biological organism.  

 


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This material is copyrighted. It may be reproduced only by written permission of its author Charles S. Yanofsky

 

 

 



[1]From:  Steven Weinberg, LIFE IN THE UNIVERSE Scientific American 271:(4) p.47 October 1994

[2]See, for example, Charles Pelligrino Reurn to Sodom and Gomorrah Avon Books New York New York  © 1994 p 90

[3] For a fuller discussion of this topic see Michael  Rothschild  (1990) Bionomics: Economy as Ecosystem    Henry Holt and Company NewYork

[4] John Terborgh Diversity and the Tropical Rain Forest Scientific American Library, W.Hl Freeman and Company, New York  © 1992 P. 71

[5] Jared Diamond The Third Chimpanzee Harper Collins New York © 1992

Y The Anthropic Cosmoligical Principle is idea that the universe would have to be just exactly as it is in order to accommodate an intellectual being capable of thinking of and writing about it.  If things were even slightly different, the universe would not have humankind and thus would have no being able to understand and think about it.

y In the case of Carbon, these eight electrons will fill shell 2, its outer shell, achieving perfect happiness, if such exists. For silicon its outer  shell (3) requires 18 electrons, but a smaller part of the shell three, an orbital, will then be filled when the third shell has 8 electrons. The third shell has orbitals termed s, and p and so on. The s orbital always has 2 electrons, the p, 6 so that for Silicon 8 electrons in the outer shell will at least fill its s and p orbitals.  For a given shell the number of ideal orbitals or sub orbits equals the number of that shell, 1 for 1, 2 for 2 etc.

[6] Much of this discussion is abstracted from William J Kauffman and Larry L. Smarr Supercomputing and the Transsformation of Science Scientific American Library, New York © 1993

[7] I refer here, of course, to Carl Sagan’s 1985 novel.

[8] See Widner H, Tetrud J, Rehncrona S, Snow B, Brundin P, Gustavii B, Bjorklund A, Linvail O, Langsotn JW Bilateral Mesencephalic Grafting in Two Patients with Parkinsonism Induced by 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP). New England Journal of Medicine 327(22):1556-63, 1992 Nov 26 also Spencer DD, Robbins RJ, Naftolin F, Marek KL, Vollmer T, Leranth C, Roth RH, Price LH, Gjedde A, Bunney Bs. Et al Unilateral Transplantation of Human Fetal Mesencephalic Tissue into the Caudate Nucleus of Patients with Parkinson’s Disease. New England Journal of Medicine 327(22):1541-8, 1992, Lindvall O, Widner H, Rehncrona S, Brundin P, Odin P, Gustavii B, Frackowiak R, Leenders KL, Sawle G, Rothwell JC et al. Transplantation of Fetal Dopamine Neurons in Parkinson’s Disease: One Year Clinical and Neurophysiological Observations in Two Patients with Putaminal Implants. Annals of Neurology 31(2):155-65, 1992 Feb.

[9] Source: Medtronic Internet Web site. Figure 7: Parastep Corporation Internet Web Site

F A defibrillator senses ventricular fibrillation an electrical condition in the heart that is most often lethal in which the ventricle stops pumping blood and instead fibrillates. The wall of the heart just wiggles but does not pump. Ventricular fibrillation is one of the most common causes of sudden death, and if a person can be prevented from going into ventricular fibrillation then sometimes point out  jokingly,   he cannot die.

j For most of us, if we “know” a person, we would like to think, we can predict, within reasonable degree of certainty what he or she might do from one moment to the next.  Unpredictable persons are usually felt to be mentally ill, quixotic, or at the least willful but as a general rule we all know some of us are  more excitable, some calm, more or less anxious, rational, irrational etc. For philosophers the ages-old philosophic debate  between determinists and non-determinists is that for determinists, having all this data, if you know  the state of a person at t0  you will then always know exactly their status at t0+1, this provided you knew also about all stimuli.  The non-determinist holds that human will intervenes so that behavior at the next moment in time can’t entirely be predicted.

y It may well be that this device will not be made of Silicon but Gallium or some other data storing substance. These considerations are merely for the purpose of argument.

[10] From Britannica CD 98 "Virus"

[11] © 1996 Dr. John B. Chittick, used by permission

F for Cytosine, Adenine, Guanine used as an example here, the repeat that causes the Huntington's disease residing on the fourth chromosome and, as it turns out a majority of neurological diseases due to this particular  repeating strand, the codon for the excitatory amino acid glutamate. Thus adding extra CAG codons will translate into the resulting protein into a polyglutamate strand.

[12] See Haywood, Anne M., Transmissible Spongiform Encephalopathies New England Journal of Medicine 337,1821-28, Dec. 18, 1997 also Huang, Z, Pruisiner SB, Cohen, FE  "Scrapie Prions: A Three-dimensional Model of an Infectious Fragment"  on Internet www.ceberdyne.com/~tom/prion3d_theory.html

[13] See Scientific American "Off with Its Head!" in Technology and Business January 1998 278: p. 41

[14] Picture courtesy of Scientific American.  News and Analysis:  "Off With Its Head" January 1998 (Vol 278) p.41

[15] See DeArmond SJ, Mobley WC, DeMott DL, Barry RA, Beckstead JH, Prusiner SB.  Changes in the Localization of Brain Prion Proteins During Scrapie Infection Neurology 50: 1271-80, 1998

[16] see Linduist S, Patino M, Glover J,  Liu J-J,  "Protein Particles Similar to Those Suspected in "Mad Cow" Disease Found in Yeast Cells.  Science August 2, 1996

y One could think of some circumstances where polygyny would be adaptive and perhaps these are where it got it start in certain cultures.  In a warring society which allowed only for the survival of few males, polygyny might make sense.  The classic example of a polygynous arrangement is the Harem. Here, polygyny occurs only because of economic and societal dominance of certain males.  Polygyny  occurs in  America as well. Certain males have multiple relationships and sire  large number of offspring. In certain strata of our society  adulterous relationships with women is also quite popular.  This is quite advantageous from a biological perspective, particularly if the cuckolded husband is unaware he is supporting another man’s child.   One would think a society tolerating  mating with multiple females would be less able to compete (see below) because less of the father’s attention would  inevitably accrue his children.  Lacking certain knowledge about paternity would also increase the likelihood of incestuous or near-relative matings.  

[17] Adapted from Wilson, Sarah Matisse Rizzoli International Publications, Inc. New York1992 “Dance I First Version Paris 1909 Oil on Canvas”  Figure 56